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The map label for this gene is yhjC [H]

Identifier: 162148452

GI number: 162148452

Start: 2765915

End: 2766799

Strand: Reverse

Name: yhjC [H]

Synonym: GDI_2671

Alternate gene names: 162148452

Gene position: 2766799-2765915 (Counterclockwise)

Preceding gene: 162148457

Following gene: 162148450

Centisome position: 70.15

GC content: 68.7

Gene sequence:

>885_bases
ATGGATCGATTCGACGCCATGCGGGTGTTCACGCGGGTGGTGGAGCGCCGCAGCTTCACGCTGGCGGCCAGCGACCTGGG
CCTGCCGCGTTCGACGGTGACGGACGCGGTCAAGCGGCTGGAGGCTCGGCTGGGTGTCCGGTTGCTGCAACGCACGACGC
GCCATGTCAGCCCGACCCTGGACGGCGCGGCCTATCATCGCCGCTGCCTCGCCCTGATTGCCGACCTGGAGGATGCCGAG
GCCGCGTTCGGCGGCGCCAGGCCGCGCGGCATGCTGCGGGTCGACGTGCACGGCACGCTGGCGCGTCATTTCGTGCTGCC
GCGCCTGCCGGACTTCATGGCCGCCTATCCCGACATCGAACTGACCCTCAGCGAGGGCGACCGACTGGTGGACCTGATCC
GGGAGGGGATCGATTGCGTGCTGCGCGTGGGCGACCTTCAGGACAGCGACATGGTGGCGCGGCGGGTGGCGATGCTGGAA
GAAGTCACCTGCGCGGCGCCATCCTACCTCGCGCGGTTCGGCATGCCGGGGGATGTCGATGCGTTGGACGGGCATCGCAT
GGTCGGGTTCCGCTCGTCGGCGACCGGGACCCTTTTGCCGCTGGAATTCATGGTCGGTGACAGCCTGCGCACGATTACGC
TGCTCAGCCCGGTGGCGGTGAACGGGGCCGAGAGTCTCGTCGCGGCCGCGCGGCTGGGTCTCGGGCTGGTCCAGGTACCG
CGCTATCACGTCGTACAGGATCTGGGGCAGGGGACGCTGGTGGTGGTCCTGCCCGATCATCCCCCGTCGCGAACGCCGGT
TTCGCTGCTTTATCCGCGTCACCGGCAGGTCGCGCCGCGCGTGCGCGTGTTCATTGACTGGATTTCGCAGGTCTTCGCAG
GATAA

Upstream 100 bases:

>100_bases
TTCGCTCTCCTGTTGCGGATGGAGCGACCATGAACCTTTTCCCTAACCGGATAATCGGCCATGATCCGGCATCACAATCC
GAAAGATACGAACAAAGCCG

Downstream 100 bases:

>100_bases
TCCGCTGGTATTTGATAATTTTATGGAAATCAAGATTAATGCTCGCCATCGACAAGGTCGTCCAGCGGCCCACGAACCAG
GTTGAAGGAAGGGGCGGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGAAYHRRCLALIADLEDAE
AAFGGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIELTLSEGDRLVDLIREGIDCVLRVGDLQDSDMVARRVAMLE
EVTCAAPSYLARFGMPGDVDALDGHRMVGFRSSATGTLLPLEFMVGDSLRTITLLSPVAVNGAESLVAAARLGLGLVQVP
RYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWISQVFAG

Sequences:

>Translated_294_residues
MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGAAYHRRCLALIADLEDAE
AAFGGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIELTLSEGDRLVDLIREGIDCVLRVGDLQDSDMVARRVAMLE
EVTCAAPSYLARFGMPGDVDALDGHRMVGFRSSATGTLLPLEFMVGDSLRTITLLSPVAVNGAESLVAAARLGLGLVQVP
RYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWISQVFAG
>Mature_294_residues
MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGAAYHRRCLALIADLEDAE
AAFGGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIELTLSEGDRLVDLIREGIDCVLRVGDLQDSDMVARRVAMLE
EVTCAAPSYLARFGMPGDVDALDGHRMVGFRSSATGTLLPLEFMVGDSLRTITLLSPVAVNGAESLVAAARLGLGLVQVP
RYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWISQVFAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=36.6101694915254, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=33.5640138408304, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=31.986531986532, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=29.2857142857143, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=27.8169014084507, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=28.4745762711864, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=25.7731958762887, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=30, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=26.5536723163842, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=23.972602739726, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32282; Mature: 32282

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGAAYHRRCLALIADLEDAEAAFGGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIE
CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHCCCEE
LTLSEGDRLVDLIREGIDCVLRVGDLQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVD
EEECCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
ALDGHRMVGFRSSATGTLLPLEFMVGDSLRTITLLSPVAVNGAESLVAAARLGLGLVQVP
CCCCCEEEEECCCCCCCEEEEHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHCCCHHHCC
RYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWISQVFAG
HHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGAAYHRRCLALIADLEDAEAAFGGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIE
CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHCCCEE
LTLSEGDRLVDLIREGIDCVLRVGDLQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVD
EEECCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
ALDGHRMVGFRSSATGTLLPLEFMVGDSLRTITLLSPVAVNGAESLVAAARLGLGLVQVP
CCCCCEEEEECCCCCCCEEEEHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHCCCHHHCC
RYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWISQVFAG
HHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]