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The map label for this gene is rbsC [H]

Identifier: 162148408

GI number: 162148408

Start: 2718964

End: 2719983

Strand: Reverse

Name: rbsC [H]

Synonym: GDI_2627

Alternate gene names: 162148408

Gene position: 2719983-2718964 (Counterclockwise)

Preceding gene: 162148409

Following gene: 162148407

Centisome position: 68.96

GC content: 68.33

Gene sequence:

>1020_bases
ATGCCCAACACACTCGTCCCCCCTGTCGGCCCCGCCGACATCTCGGCCGTCCGCGCGTCCGAACGGCTTCGCAGCGCCAT
GCAGGCGGCCGGCATGCTGCCGGTCCTGGTCCTGCTGGCCATCTGTTTCCACGTCTTTGGCGGCCACCGCTTCCTCAGCG
GCCAGAACCTGTCGATCGTCGCCCAGCAGGCCGCGATCAATATCGTGCTGTCGGCCGGGATGACCTTCGTCATCCTGACG
GGCGGCATCGACCTGTCCGTGGGCTCGACCCTGGCATTCTCGGCCATGGGCGGGCTGATGGTCTCGCTGGTGCCGGGCCT
GGGCTGGCTGGCGATCCCGACCTGCCTTGCCGCCGGGTTGCTGGTCGGCCTGTTCAACGGGTCGCTGATCGCGGGGCTGA
AGATTCCGCCCTTCATCGTCACCCTCGGCACCCTGACCGCCGTGCGCGGGCTGGCGCGGCTGATGGGGGCGGACCGCACC
ATCTTCAACCCGTCTCTGTCCTATGCCTGGATCGGCAATGACGGCATTCCCGTCACCTCCACGCTGGTCATTCCCTGGCT
TGCCGTCATCGCACTGGTCGTCGTCGTCACCTGCTGGTTCGTGCTGCGGCGCACCGTGCTGGGCGTGCATATCTATGCGG
TGGGCGGCAACCCCGCCGCCGCGCGCCTGGCGGGTATCAACGTGCCGGCCGTGCTGATGTTCGTCTATGCGCTGTCCGGC
CTGCTGGCGGGGCTGGGCGGCGTCATGTCCTCGGCCCGCCTCTATGCCGCCAACGGGCTGCAACTGGGCCAGTCCTACGA
ACTGGACGCCATCGCGGCGGTAATCCTGGGCGGGACGTCCTTCGTCGGCGGCATCGGCTCGGTCTGGGGCACGCTGGTCG
GCGGCCTGATGATCGCGGTGCTGTCCAACGGACTGATCCTGATCGGGGTGTCCGACATCTGGCAGTTCATCATCAAGGGC
CTGGTCATCATCGTCGCCGTGGCGCTCGACCGCTTCCGCCAGCCCGCCGCGCGCACCTGA

Upstream 100 bases:

>100_bases
CGTCATCACGGGCGAGGTCGGCGGCCCCGAAAGCCCCGACATCAGCCAGGAAGCCATCATGGCCTATGCCGCCGGCATAG
CGGCCTGAGGAACCCCAGAC

Downstream 100 bases:

>100_bases
TCGCGGCGTCCTCCCACTTTTCCTTCCCCCCCTCATCGGACCTGTCAACATGACGTTCAAATCCGTCCTTCTCGCCGGCC
TGGCTGTACTCTCGCTGGCC

Product: ribose ABC transporter permease rbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MPNTLVPPVGPADISAVRASERLRSAMQAAGMLPVLVLLAICFHVFGGHRFLSGQNLSIVAQQAAINIVLSAGMTFVILT
GGIDLSVGSTLAFSAMGGLMVSLVPGLGWLAIPTCLAAGLLVGLFNGSLIAGLKIPPFIVTLGTLTAVRGLARLMGADRT
IFNPSLSYAWIGNDGIPVTSTLVIPWLAVIALVVVVTCWFVLRRTVLGVHIYAVGGNPAAARLAGINVPAVLMFVYALSG
LLAGLGGVMSSARLYAANGLQLGQSYELDAIAAVILGGTSFVGGIGSVWGTLVGGLMIAVLSNGLILIGVSDIWQFIIKG
LVIIVAVALDRFRQPAART

Sequences:

>Translated_339_residues
MPNTLVPPVGPADISAVRASERLRSAMQAAGMLPVLVLLAICFHVFGGHRFLSGQNLSIVAQQAAINIVLSAGMTFVILT
GGIDLSVGSTLAFSAMGGLMVSLVPGLGWLAIPTCLAAGLLVGLFNGSLIAGLKIPPFIVTLGTLTAVRGLARLMGADRT
IFNPSLSYAWIGNDGIPVTSTLVIPWLAVIALVVVVTCWFVLRRTVLGVHIYAVGGNPAAARLAGINVPAVLMFVYALSG
LLAGLGGVMSSARLYAANGLQLGQSYELDAIAAVILGGTSFVGGIGSVWGTLVGGLMIAVLSNGLILIGVSDIWQFIIKG
LVIIVAVALDRFRQPAART
>Mature_338_residues
PNTLVPPVGPADISAVRASERLRSAMQAAGMLPVLVLLAICFHVFGGHRFLSGQNLSIVAQQAAINIVLSAGMTFVILTG
GIDLSVGSTLAFSAMGGLMVSLVPGLGWLAIPTCLAAGLLVGLFNGSLIAGLKIPPFIVTLGTLTAVRGLARLMGADRTI
FNPSLSYAWIGNDGIPVTSTLVIPWLAVIALVVVVTCWFVLRRTVLGVHIYAVGGNPAAARLAGINVPAVLMFVYALSGL
LAGLGGVMSSARLYAANGLQLGQSYELDAIAAVILGGTSFVGGIGSVWGTLVGGLMIAVLSNGLILIGVSDIWQFIIKGL
VIIVAVALDRFRQPAART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=39.1025641025641, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1790524, Length=300, Percent_Identity=37.3333333333333, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1789992, Length=358, Percent_Identity=32.9608938547486, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788896, Length=311, Percent_Identity=36.0128617363344, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788471, Length=351, Percent_Identity=34.1880341880342, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI145693152, Length=318, Percent_Identity=32.7044025157233, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082395, Length=273, Percent_Identity=37.7289377289377, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=37.2, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787793, Length=309, Percent_Identity=32.3624595469256, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787794, Length=267, Percent_Identity=32.2097378277154, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34805; Mature: 34674

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNTLVPPVGPADISAVRASERLRSAMQAAGMLPVLVLLAICFHVFGGHRFLSGQNLSIV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCHHEE
AQQAAINIVLSAGMTFVILTGGIDLSVGSTLAFSAMGGLMVSLVPGLGWLAIPTCLAAGL
HHHHHHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LVGLFNGSLIAGLKIPPFIVTLGTLTAVRGLARLMGADRTIFNPSLSYAWIGNDGIPVTS
HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCCHHH
TLVIPWLAVIALVVVVTCWFVLRRTVLGVHIYAVGGNPAAARLAGINVPAVLMFVYALSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHH
LLAGLGGVMSSARLYAANGLQLGQSYELDAIAAVILGGTSFVGGIGSVWGTLVGGLMIAV
HHHHHHHHHHHCHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LSNGLILIGVSDIWQFIIKGLVIIVAVALDRFRQPAART
HHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PNTLVPPVGPADISAVRASERLRSAMQAAGMLPVLVLLAICFHVFGGHRFLSGQNLSIV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCHHEE
AQQAAINIVLSAGMTFVILTGGIDLSVGSTLAFSAMGGLMVSLVPGLGWLAIPTCLAAGL
HHHHHHHHHHHCCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LVGLFNGSLIAGLKIPPFIVTLGTLTAVRGLARLMGADRTIFNPSLSYAWIGNDGIPVTS
HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCCCHHH
TLVIPWLAVIALVVVVTCWFVLRRTVLGVHIYAVGGNPAAARLAGINVPAVLMFVYALSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHH
LLAGLGGVMSSARLYAANGLQLGQSYELDAIAAVILGGTSFVGGIGSVWGTLVGGLMIAV
HHHHHHHHHHHCHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LSNGLILIGVSDIWQFIIKGLVIIVAVALDRFRQPAART
HHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]