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The map label for this gene is yqhC [H]

Identifier: 162148312

GI number: 162148312

Start: 2624278

End: 2625189

Strand: Reverse

Name: yqhC [H]

Synonym: GDI_2529

Alternate gene names: 162148312

Gene position: 2625189-2624278 (Counterclockwise)

Preceding gene: 162148315

Following gene: 162148307

Centisome position: 66.56

GC content: 68.42

Gene sequence:

>912_bases
ATGCGGCAATCGATCGAGGCATTGCGCCACCATATTGACAGGCATTGCAAGGCGGGTCGCGTCGAAACCGTGGTGCCCGG
CCTGTCGCTGATGCGCGCCGACGCGCCGACGCTGCCGGTCAGTTGCGTGTACCAGCCCACGCTTTGCCTGATCGTGCAGG
GCAGCAAGCAGGTGGTGTTGGGCGATCGGATCTTCGCCTATGACGCGCGGAACTACCTGATCGCCACGGTGGACCTGCCG
GTGACGGGCGGCGTCACGCAGGCGACGCCCGATTATCCCTATCTGGCGCTGAGCCTGGCGCTGGACCCGTCGCGGATTGC
CGCCCTGCTGCTGGACGTGCCCGCCGTGCTGGCCGAAACCAGGCCGGCGGCGGGCCTGGCCGTCAGCACGGTGACCGACA
CGCTGCTCGACCCCGTGGCGCGGCTGGTCGGGTTGCTGGACCGGCCGGAGGACATCCCGGTGCTGGCGCCCCTGTTCGAG
CAGGAGATCCTCTACCGGCTGCTGCAGGGCGACCAGGGCGGGATACTGCGACAGGTTGCCCGCGCCGACAGCTATCTGTC
CCATGTCCGCCGGGCGGTCGCCTGGATACGCGATCATTACGCCGAGCCGTTCAGTATCGGTGACCTGGCGGCCCAAACGG
GCATGAGTGCTTCGTCCTTCCACCGTCATTTCAAGGCGGTGACGATGATGAGCCCCCTGCAATACCGCACGCGCATCCGC
CTGCAGGAGGCACGGCGCATGTTGCTGGCCGACGGGCAGGACGCCGCCGGCATCGGCTTCGTGGTGGGCTATGACAGCCC
GTCGCAATTCAGCCGGGAATATCGCCGGATGTTCGGCGTTCCACCCGCGCGTGACGCCGCGCGCCTGCGCCGGACGGACG
GCGAGGCACGCGGCCTGGCCTATCCGCCCTGA

Upstream 100 bases:

>100_bases
CGGAATGCTGTCTGGTTCTTGCACGATCCTGCCGAAGATCCGGCCCCATGGCTTGCCAGATGCCGGTCCAGCGGCCACAT
CGGTGGGCGGAGGGAACGGC

Downstream 100 bases:

>100_bases
TTCCGCCGGTCGCGCGGGGCAGGCGGCGCAGCCGGAGGGCAGCCCCCAGCGCCCCGGCCAGCAGGATCAGGTGAAGGCGG
CGACCCCGTTCCACCCCAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRQSIEALRHHIDRHCKAGRVETVVPGLSLMRADAPTLPVSCVYQPTLCLIVQGSKQVVLGDRIFAYDARNYLIATVDLP
VTGGVTQATPDYPYLALSLALDPSRIAALLLDVPAVLAETRPAAGLAVSTVTDTLLDPVARLVGLLDRPEDIPVLAPLFE
QEILYRLLQGDQGGILRQVARADSYLSHVRRAVAWIRDHYAEPFSIGDLAAQTGMSASSFHRHFKAVTMMSPLQYRTRIR
LQEARRMLLADGQDAAGIGFVVGYDSPSQFSREYRRMFGVPPARDAARLRRTDGEARGLAYPP

Sequences:

>Translated_303_residues
MRQSIEALRHHIDRHCKAGRVETVVPGLSLMRADAPTLPVSCVYQPTLCLIVQGSKQVVLGDRIFAYDARNYLIATVDLP
VTGGVTQATPDYPYLALSLALDPSRIAALLLDVPAVLAETRPAAGLAVSTVTDTLLDPVARLVGLLDRPEDIPVLAPLFE
QEILYRLLQGDQGGILRQVARADSYLSHVRRAVAWIRDHYAEPFSIGDLAAQTGMSASSFHRHFKAVTMMSPLQYRTRIR
LQEARRMLLADGQDAAGIGFVVGYDSPSQFSREYRRMFGVPPARDAARLRRTDGEARGLAYPP
>Mature_303_residues
MRQSIEALRHHIDRHCKAGRVETVVPGLSLMRADAPTLPVSCVYQPTLCLIVQGSKQVVLGDRIFAYDARNYLIATVDLP
VTGGVTQATPDYPYLALSLALDPSRIAALLLDVPAVLAETRPAAGLAVSTVTDTLLDPVARLVGLLDRPEDIPVLAPLFE
QEILYRLLQGDQGGILRQVARADSYLSHVRRAVAWIRDHYAEPFSIGDLAAQTGMSASSFHRHFKAVTMMSPLQYRTRIR
LQEARRMLLADGQDAAGIGFVVGYDSPSQFSREYRRMFGVPPARDAARLRRTDGEARGLAYPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=281, Percent_Identity=35.5871886120996, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1790339, Length=158, Percent_Identity=27.8481012658228, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33314; Mature: 33314

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSIEALRHHIDRHCKAGRVETVVPGLSLMRADAPTLPVSCVYQPTLCLIVQGSKQVVL
CCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCCCCCEEEEECCEEEEEEECCCEEEE
GDRIFAYDARNYLIATVDLPVTGGVTQATPDYPYLALSLALDPSRIAALLLDVPAVLAET
CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCC
RPAAGLAVSTVTDTLLDPVARLVGLLDRPEDIPVLAPLFEQEILYRLLQGDQGGILRQVA
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
RADSYLSHVRRAVAWIRDHYAEPFSIGDLAAQTGMSASSFHRHFKAVTMMSPLQYRTRIR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHH
LQEARRMLLADGQDAAGIGFVVGYDSPSQFSREYRRMFGVPPARDAARLRRTDGEARGLA
HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
YPP
CCC
>Mature Secondary Structure
MRQSIEALRHHIDRHCKAGRVETVVPGLSLMRADAPTLPVSCVYQPTLCLIVQGSKQVVL
CCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCCCCCEEEEECCEEEEEEECCCEEEE
GDRIFAYDARNYLIATVDLPVTGGVTQATPDYPYLALSLALDPSRIAALLLDVPAVLAET
CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCC
RPAAGLAVSTVTDTLLDPVARLVGLLDRPEDIPVLAPLFEQEILYRLLQGDQGGILRQVA
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
RADSYLSHVRRAVAWIRDHYAEPFSIGDLAAQTGMSASSFHRHFKAVTMMSPLQYRTRIR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHH
LQEARRMLLADGQDAAGIGFVVGYDSPSQFSREYRRMFGVPPARDAARLRRTDGEARGLA
HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
YPP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]