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The map label for this gene is yjiR [C]

Identifier: 162148215

GI number: 162148215

Start: 2517692

End: 2519116

Strand: Direct

Name: yjiR [C]

Synonym: GDI_2432

Alternate gene names: 162148215

Gene position: 2517692-2519116 (Clockwise)

Preceding gene: 162148214

Following gene: 162148220

Centisome position: 63.83

GC content: 71.79

Gene sequence:

>1425_bases
ATGGACCGAGACAGCATGTGGCGCCCCGATATCCCACCTGCGCCCGGCCCGCTCTATCATCGGCTGGCCGACGCCATGGA
ACGCGATATCGCGGCCGGGACGCTGGATAACGGCACGCGGCTGCCCCCGCATCGCGACCTGGCCCATGCGCTGGGAATCA
GCATCGGCACCGTGACCAAGGCCTATGCCGAGGCCGAGCGGCGCGGCCTGCTGCAGGCCCATGTCGGCCGGGGGTCGTTC
ATCCGCGCGCCGACGCCCGACGTGGCGATCCTGCCCACCTTCGACATCGCGCCGACTCCCGCACCGCGGGGGACGATGAT
CGACCTGCGCTGCAACACCCCGCCCGCGGTCGCATTGTCACAGGCGCTGGAACGCGCCGTCACGCAACTGGCGGCGGCCG
GGCACCTGGAGCCCGCCGTGCAGTATATCCAGGGCAGCGGCCTGCGCCCGGTGCGCGAGGCCGGGTCGGCGTGGCTGGCG
CGGCGCTACGGGCTGGAGCGCGATCCGGGCGACCTGATCCAGTGCAATGGCGGGCAGCATGCGATCGCGCTGACCCTGTC
GGCGCTCTGTCGTCCGGGCGATACGGTGCTGTGCGAATCCTCGACCTTCTATGGCGCCAAGATCGCTGCGGAGCATCTGG
GCCTGTCCCTGCGCGGGGTCACGATGGACCATGAAGGGCTGGTGCCGGCGGCGCTGGACCGCATCGTTGCAGAAACCCGC
GCCCGGGTGCTGTTCACGGTGCCGACGCTGCACAACCCCACCGCCCGCACGATGGGCGCCGCGCGGCGCGAGGAGATCGT
GCGGATCGCCCGGCGGCACGACCTGACGATCGTCGAGGACGACGCCTATTCCGCCTACGCCGACCCGGGCGACCGTCCTC
CGCCGATCGCGTCCCTCGCGCCCGAACGCACGCTCTATCTGGCCAGTATTTCCAAGGGGATCTGTCCGGGACTCCGCCTG
GCTTTCGTCGCGCTGCCGCCCGCCATGCCGCGCGAGCGGATCCTGCGCGGCATCCGCGCCCTGGGCTATTGCCCCCCGGC
GCTGGGCGGACTGGTCTTTACCCGCTGGGTGGCGGACGGCACCGCCGACGCCGTCGCCGACGCGGTCCAGGCCGAGGCCG
CCACTCGGCTGGACCTGGCACGGCGAATCCTGGGCGATGCGATGGAACAGCCGGGCGCCGTGCGCTCGCCCCATATCTGG
CTGCCCTTGTCGCCGGTGCAGACCCAGCGGGTCATCGGACGGGCCCTGCGCGCCGGCGTGGAACTGACGCCGCAGGAGGC
ATCCAGCGTGTCGCGCGATGCCGATCCGGGCGTGCGGGTCTGCCTGGGCGCCCCGGCAGACCGCGCGACGCTGGAACAGG
CGCTGCATGTCCTGCGCACGGCGCTCCATGACAGCGAGGTCAGCCAAACCGAAGGCATCGTCTGA

Upstream 100 bases:

>100_bases
GTACAACTTCGTCGCTCTCTTCATTTCTTGAGTTTTCATCTATGACATTCGTTGGTCAACGGCTATATTGTCATAGTTCA
ATCAAGCCGGAGCCGCACAA

Downstream 100 bases:

>100_bases
CGACGGCGTCCGCCAGGGACACGGGCTGTCAGGGCGCGGCGGCCGGCAGCCGCCAGCCATATCGCAATGCCAGCAGCCGC
AGTCCGAAACAGAGCAGCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MDRDSMWRPDIPPAPGPLYHRLADAMERDIAAGTLDNGTRLPPHRDLAHALGISIGTVTKAYAEAERRGLLQAHVGRGSF
IRAPTPDVAILPTFDIAPTPAPRGTMIDLRCNTPPAVALSQALERAVTQLAAAGHLEPAVQYIQGSGLRPVREAGSAWLA
RRYGLERDPGDLIQCNGGQHAIALTLSALCRPGDTVLCESSTFYGAKIAAEHLGLSLRGVTMDHEGLVPAALDRIVAETR
ARVLFTVPTLHNPTARTMGAARREEIVRIARRHDLTIVEDDAYSAYADPGDRPPPIASLAPERTLYLASISKGICPGLRL
AFVALPPAMPRERILRGIRALGYCPPALGGLVFTRWVADGTADAVADAVQAEAATRLDLARRILGDAMEQPGAVRSPHIW
LPLSPVQTQRVIGRALRAGVELTPQEASSVSRDADPGVRVCLGAPADRATLEQALHVLRTALHDSEVSQTEGIV

Sequences:

>Translated_474_residues
MDRDSMWRPDIPPAPGPLYHRLADAMERDIAAGTLDNGTRLPPHRDLAHALGISIGTVTKAYAEAERRGLLQAHVGRGSF
IRAPTPDVAILPTFDIAPTPAPRGTMIDLRCNTPPAVALSQALERAVTQLAAAGHLEPAVQYIQGSGLRPVREAGSAWLA
RRYGLERDPGDLIQCNGGQHAIALTLSALCRPGDTVLCESSTFYGAKIAAEHLGLSLRGVTMDHEGLVPAALDRIVAETR
ARVLFTVPTLHNPTARTMGAARREEIVRIARRHDLTIVEDDAYSAYADPGDRPPPIASLAPERTLYLASISKGICPGLRL
AFVALPPAMPRERILRGIRALGYCPPALGGLVFTRWVADGTADAVADAVQAEAATRLDLARRILGDAMEQPGAVRSPHIW
LPLSPVQTQRVIGRALRAGVELTPQEASSVSRDADPGVRVCLGAPADRATLEQALHVLRTALHDSEVSQTEGIV
>Mature_474_residues
MDRDSMWRPDIPPAPGPLYHRLADAMERDIAAGTLDNGTRLPPHRDLAHALGISIGTVTKAYAEAERRGLLQAHVGRGSF
IRAPTPDVAILPTFDIAPTPAPRGTMIDLRCNTPPAVALSQALERAVTQLAAAGHLEPAVQYIQGSGLRPVREAGSAWLA
RRYGLERDPGDLIQCNGGQHAIALTLSALCRPGDTVLCESSTFYGAKIAAEHLGLSLRGVTMDHEGLVPAALDRIVAETR
ARVLFTVPTLHNPTARTMGAARREEIVRIARRHDLTIVEDDAYSAYADPGDRPPPIASLAPERTLYLASISKGICPGLRL
AFVALPPAMPRERILRGIRALGYCPPALGGLVFTRWVADGTADAVADAVQAEAATRLDLARRILGDAMEQPGAVRSPHIW
LPLSPVQTQRVIGRALRAGVELTPQEASSVSRDADPGVRVCLGAPADRATLEQALHVLRTALHDSEVSQTEGIV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=24.9211356466877, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=24.9211356466877, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI1790797, Length=324, Percent_Identity=29.320987654321, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787710, Length=329, Percent_Identity=26.7477203647416, Blast_Score=108, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6321236, Length=192, Percent_Identity=27.0833333333333, Blast_Score=78, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50656; Mature: 50656

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRDSMWRPDIPPAPGPLYHRLADAMERDIAAGTLDNGTRLPPHRDLAHALGISIGTVTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHH
AYAEAERRGLLQAHVGRGSFIRAPTPDVAILPTFDIAPTPAPRGTMIDLRCNTPPAVALS
HHHHHHHHCCHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHH
QALERAVTQLAAAGHLEPAVQYIQGSGLRPVREAGSAWLARRYGLERDPGDLIQCNGGQH
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCE
AIALTLSALCRPGDTVLCESSTFYGAKIAAEHLGLSLRGVTMDHEGLVPAALDRIVAETR
EHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHC
ARVLFTVPTLHNPTARTMGAARREEIVRIARRHDLTIVEDDAYSAYADPGDRPPPIASLA
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
PERTLYLASISKGICPGLRLAFVALPPAMPRERILRGIRALGYCPPALGGLVFTRWVADG
CCCEEEHHHHHCCCCCHHHEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
TADAVADAVQAEAATRLDLARRILGDAMEQPGAVRSPHIWLPLSPVQTQRVIGRALRAGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
ELTPQEASSVSRDADPGVRVCLGAPADRATLEQALHVLRTALHDSEVSQTEGIV
CCCHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDRDSMWRPDIPPAPGPLYHRLADAMERDIAAGTLDNGTRLPPHRDLAHALGISIGTVTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHH
AYAEAERRGLLQAHVGRGSFIRAPTPDVAILPTFDIAPTPAPRGTMIDLRCNTPPAVALS
HHHHHHHHCCHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHH
QALERAVTQLAAAGHLEPAVQYIQGSGLRPVREAGSAWLARRYGLERDPGDLIQCNGGQH
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCE
AIALTLSALCRPGDTVLCESSTFYGAKIAAEHLGLSLRGVTMDHEGLVPAALDRIVAETR
EHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHC
ARVLFTVPTLHNPTARTMGAARREEIVRIARRHDLTIVEDDAYSAYADPGDRPPPIASLA
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
PERTLYLASISKGICPGLRLAFVALPPAMPRERILRGIRALGYCPPALGGLVFTRWVADG
CCCEEEHHHHHCCCCCHHHEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
TADAVADAVQAEAATRLDLARRILGDAMEQPGAVRSPHIWLPLSPVQTQRVIGRALRAGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC
ELTPQEASSVSRDADPGVRVCLGAPADRATLEQALHVLRTALHDSEVSQTEGIV
CCCHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]