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The map label for this gene is ligT

Identifier: 162147823

GI number: 162147823

Start: 2082123

End: 2082662

Strand: Direct

Name: ligT

Synonym: GDI_2039

Alternate gene names: NA

Gene position: 2082123-2082662 (Clockwise)

Preceding gene: 162147815

Following gene: 162147824

Centisome position: 52.79

GC content: 69.63

Gene sequence:

>540_bases
ATGAGACTGTTCGTGGCCATCGAGATCGTGCCGCCGCTGCGCGACGCCATTGCCAGCCTGCGCGGCAGCCTGGCAGGCGT
CCGGTGGACCGATCCGCTGTCCTATCACCTGACCTTGCGCTTCATCGGGGACGTGCGGGACCGCGCCCGGCAGGAGGACA
TCCATCACGCCCTGATGGCGATTCGCGCCCCGACCTGCACCCTGTCCCCCCAGGGGCCGGGCGTGTTCGAGCAGGAGGGC
GGCCTAGACCGGCTATGGATCGGGGTCGCGCGAAGCGATCCGCTGATGCATCTGCAACGCAAGGTCGATACCGCGATACG
CCGCGCGGCCGGCCTGCAGGTCGAGCGGCGGCGTTTCCTGCCCCATGTCACCATCGGTTCGGTCGCCCGCCCGCCGCCGC
CCGTGATGTCGGCGTGGCTGACCCAGTGGGGCACCGTTCCCCCGCCCCCGGCGGACGCCACGCATTTCACCCTGTTCCGT
TCGTTACGTGGCCCGGATCAGCCCCTGTACGACCCGCTGGCCGAATATCCTCTCGGGTAG

Upstream 100 bases:

>100_bases
CAAATCCCGGGACCAAACACCTACCCTATTCATTATAGACTCCGCGGCGGCCGGTGGAAACTTTCCCGTCCCGGATCGGA
AAGAACGCCGGAGAAGGCAG

Downstream 100 bases:

>100_bases
CGATTCGGCATGGCGATGACGGTATCCGAATGCATGCGATGGATGCATATTTATCATAACATGGATAATTATTCATAACG
CAGCCAGACTTCACGTCCCC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MRLFVAIEIVPPLRDAIASLRGSLAGVRWTDPLSYHLTLRFIGDVRDRARQEDIHHALMAIRAPTCTLSPQGPGVFEQEG
GLDRLWIGVARSDPLMHLQRKVDTAIRRAAGLQVERRRFLPHVTIGSVARPPPPVMSAWLTQWGTVPPPPADATHFTLFR
SLRGPDQPLYDPLAEYPLG

Sequences:

>Translated_179_residues
MRLFVAIEIVPPLRDAIASLRGSLAGVRWTDPLSYHLTLRFIGDVRDRARQEDIHHALMAIRAPTCTLSPQGPGVFEQEG
GLDRLWIGVARSDPLMHLQRKVDTAIRRAAGLQVERRRFLPHVTIGSVARPPPPVMSAWLTQWGTVPPPPADATHFTLFR
SLRGPDQPLYDPLAEYPLG
>Mature_179_residues
MRLFVAIEIVPPLRDAIASLRGSLAGVRWTDPLSYHLTLRFIGDVRDRARQEDIHHALMAIRAPTCTLSPQGPGVFEQEG
GLDRLWIGVARSDPLMHLQRKVDTAIRRAAGLQVERRRFLPHVTIGSVARPPPPVMSAWLTQWGTVPPPPADATHFTLFR
SLRGPDQPLYDPLAEYPLG

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19960; Mature: 19960

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFVAIEIVPPLRDAIASLRGSLAGVRWTDPLSYHLTLRFIGDVRDRARQEDIHHALMA
CEEEEEEEECCCHHHHHHHHHHHHCCCEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
IRAPTCTLSPQGPGVFEQEGGLDRLWIGVARSDPLMHLQRKVDTAIRRAAGLQVERRRFL
HHCCCEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PHVTIGSVARPPPPVMSAWLTQWGTVPPPPADATHFTLFRSLRGPDQPLYDPLAEYPLG
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRLFVAIEIVPPLRDAIASLRGSLAGVRWTDPLSYHLTLRFIGDVRDRARQEDIHHALMA
CEEEEEEEECCCHHHHHHHHHHHHCCCEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
IRAPTCTLSPQGPGVFEQEGGLDRLWIGVARSDPLMHLQRKVDTAIRRAAGLQVERRRFL
HHCCCEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PHVTIGSVARPPPPVMSAWLTQWGTVPPPPADATHFTLFRSLRGPDQPLYDPLAEYPLG
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]