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The map label for this gene is smpB

Identifier: 162147664

GI number: 162147664

Start: 1914741

End: 1915205

Strand: Direct

Name: smpB

Synonym: GDI_1880

Alternate gene names: 162147664

Gene position: 1914741-1915205 (Clockwise)

Preceding gene: 162147663

Following gene: 162147667

Centisome position: 48.55

GC content: 66.02

Gene sequence:

>465_bases
ATGATTTCGACCGGGATCGCGGCGCAGAACCGCAAGGGCCGCTTCAACTACACGATCCTGGAAACGCTGGAAGCCGGGAT
GGTGCTGAAGGGCCCCGAGGTCAAGAGCCTGCGCCTGGGCCGCGCCACGATCAACGAGGCCTATGCCGGCGACCGGGACG
GCGAGATCTGGCTGTTCAACAGCTATATCCCCGAGTACCAGGGCGGTGTGCTGTCGCGGTTCGAAACCCGCGCGCCCCGC
AAATTGCTGCTGCACCGCAAGCAGGTGGACAAGCTGCTGGGCGCCGTCGCGCGCGATGGCGTGACCCTGGTGCCGCTGGA
TATCCATTTCAACGCCCGTGGGGTTGCCAAGGTGACGCTGGGTATCGGCGAGGGGCGCAAGAAGGCGGACAAGCGCCAGG
CCATTGCCGACCGCGACTGGCAGCGGGACAAGGCGCGGCTGCTGCGCAACAAGGGCAGGGAATAG

Upstream 100 bases:

>100_bases
CTGGCCCCGCTGGCCGAGGACTCCCGCATGCGGGTGCGTGAGGCGCTGACCGGCGCGGGGCTGTTGAACTAGCATCATGG
CGGAAAAGAAAAAGAGCGGC

Downstream 100 bases:

>100_bases
CCGCAAACGAAACAGGGCCGCCCGAAGGCGGCCCTGTCTGGTGTTCCGGTGGGAAACCGGGAGGTCAGTCGACGCTGATC
GACGCGGCCTCGGGACCCTT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFNSYIPEYQGGVLSRFETRAPR
KLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTLGIGEGRKKADKRQAIADRDWQRDKARLLRNKGRE

Sequences:

>Translated_154_residues
MISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFNSYIPEYQGGVLSRFETRAPR
KLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTLGIGEGRKKADKRQAIADRDWQRDKARLLRNKGRE
>Mature_154_residues
MISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFNSYIPEYQGGVLSRFETRAPR
KLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTLGIGEGRKKADKRQAIADRDWQRDKARLLRNKGRE

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=151, Percent_Identity=40.3973509933775, Blast_Score=110, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_GLUDA (A9HIW5)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001602125.1
- RefSeq:   YP_002274519.1
- ProteinModelPortal:   A9HIW5
- SMR:   A9HIW5
- GeneID:   5791525
- GeneID:   6973495
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_0104
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17299; Mature: 17299

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFN
CCCCCCCCCCCCCCEEHHHHHHHHCCEEECCCCCCEEECCHHHHHHHHCCCCCCCEEEEC
SYIPEYQGGVLSRFETRAPRKLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTL
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEEE
GIGEGRKKADKRQAIADRDWQRDKARLLRNKGRE
ECCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFN
CCCCCCCCCCCCCCEEHHHHHHHHCCEEECCCCCCEEECCHHHHHHHHCCCCCCCEEEEC
SYIPEYQGGVLSRFETRAPRKLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTL
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEEE
GIGEGRKKADKRQAIADRDWQRDKARLLRNKGRE
ECCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA