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The map label for this gene is xseB

Identifier: 162147646

GI number: 162147646

Start: 1900876

End: 1901106

Strand: Reverse

Name: xseB

Synonym: GDI_1862

Alternate gene names: 162147646

Gene position: 1901106-1900876 (Counterclockwise)

Preceding gene: 162147647

Following gene: 162147645

Centisome position: 48.2

GC content: 61.47

Gene sequence:

>231_bases
ATGACGGAAGACCTGTCCCAGCTCTCCTTCGAAGACGCCCTCGCCCAGTTGGAAGAGATCGTGCGTCAGTTGGAAGGCGG
GCAGTTGCGGCTTCAGGACGCCATCGCGTCCTATGAGCGGGGTGCGGCCCTGAGACGATATTGCGACACCAAGCTGAACG
AGGCCGACGCCCGCGTTCAGGCGATTATCCAGCGCGCCGATGGCGCGCTGGAGACGAAATCTATGGATTGA

Upstream 100 bases:

>100_bases
TGCCACAAGCTGCACAAATTCATGTCATATCCCCTACGCCCTTGGCAGAAGCGCCCGGCAGGGAGTAATTCCTCCGCCTC
ATGATGGAAGTATCGCACCC

Downstream 100 bases:

>100_bases
TGCGCCGATGAGCCAGACAACTGCGACAGCCCACATGGAGAACTCCGCGGATCGCGCCAGCCTGCTGCGGTCCTCCCTGT
CGAACAGGGCGACGGCCATC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MTEDLSQLSFEDALAQLEEIVRQLEGGQLRLQDAIASYERGAALRRYCDTKLNEADARVQAIIQRADGALETKSMD

Sequences:

>Translated_76_residues
MTEDLSQLSFEDALAQLEEIVRQLEGGQLRLQDAIASYERGAALRRYCDTKLNEADARVQAIIQRADGALETKSMD
>Mature_75_residues
TEDLSQLSFEDALAQLEEIVRQLEGGQLRLQDAIASYERGAALRRYCDTKLNEADARVQAIIQRADGALETKSMD

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_GLUDA (A9HIR6)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001602107.1
- RefSeq:   YP_002274504.1
- ProteinModelPortal:   A9HIR6
- SMR:   A9HIR6
- GeneID:   5789456
- GeneID:   6973478
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_0089
- HOGENOM:   HBG728416
- OMA:   PFEKALE
- ProtClustDB:   CLSK2403038
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8501; Mature: 8369

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDLSQLSFEDALAQLEEIVRQLEGGQLRLQDAIASYERGAALRRYCDTKLNEADARVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AIIQRADGALETKSMD
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TEDLSQLSFEDALAQLEEIVRQLEGGQLRLQDAIASYERGAALRRYCDTKLNEADARVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AIIQRADGALETKSMD
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA