Click here to switch to the map view.

The map label for this gene is recF [H]

Identifier: 162147557

GI number: 162147557

Start: 1800939

End: 1802060

Strand: Direct

Name: recF [H]

Synonym: GDI_1773

Alternate gene names: 162147557

Gene position: 1800939-1802060 (Clockwise)

Preceding gene: 162147556

Following gene: 162147558

Centisome position: 45.66

GC content: 73.8

Gene sequence:

>1122_bases
ATGGCGCGTCTCGACCGGCTGGCGCTGACGGATTTCAGGAACTACCGGCACCTGGCCTGGCGGCCCGAGGCGCCCGTCAC
CGTGGTGACGGGCGAAAACGGCAGCGGCAAGACCAATCTTCTGGAAGCCCTGTCGCTGCTGGTGCCCGGGCGCGGCCTGC
GCGGCGCGCGCAGTGCCGAGATGGCCCGTCACGGCACCACGATCTGGGGCGTCGCGGCGCGCTTCACCGGGCCCGACGGC
GCCCCCTTCGACATCGCCACCGGCAGCGATCCGGCGCGGCCGGAACGGCGGGTCTTCCGCCGTGACGGCGAAACCCTGCG
CAGTCGCGCGGCCCTGGCCGATCACCTGTCCGCCGTCTGGCTGACCCCGCAGATGGACCGCCTGTTCCAGGACGGCCTGC
CGGGCCGGCGGCGCTTCCTGGACCGTCTGGTCCTGGCGCTGGAACCCGGCCACGCGCGCGAACTGGCGGCGCATGACCAG
GCCATGGGCCAGCGCAATCGCCTGCTGGCGGCGGGACGCGCCGATCCGGGCTGGCTGTCGGCGCTGGAGGATTCGATGGC
GCGCCATGCCGTCGCGGCCTCGGCCGCGCGGCTGGCGCTGGTGACGCAGTTGAACGGCGAGGCGGCGCATACGGTGCCGG
ACGGCTTTCCCCCGGCGCGGCTCGATATCCTGTGCCCCATCGTCCAGCAATTGCGCGACCGGCCGGCACTGGCGGTGGAG
GATTGGCTGCGCGGACGGCTTGCGGCCGGCCGGGCGTGCGATAGCGCGCGCGGCGGTGCAGGGATCGGGGCCCATCGGGC
CGACATGGCGCTGTCGGACCAGGCCAGCGGCCGCCCGGCGGCACAGGCCAGCACCGGCCAGCAGAAGGCCCTGCTGCTGG
GGGTGGTGCTGGCCCACGCGGCGCTGATGACGCGCAGCCGGGGCGAGGCACCGATGATCCTGCTCGACGAACCGCTGGTG
CATCTGGACGAGGCGCGGCGGGCGGCCCTGTTTCGCAGCGTGGGCGCGTTCGACGCCACGGTCCTGATGACCGGAACCGA
TGCCGATCAGTTCGCCCCGCTGCGCGGCCGGGCGGGATTCGTCTCCCCCCGCAATGGCGCGCTGGACGGGAAGCCTGTAT
GA

Upstream 100 bases:

>100_bases
CGATCGTCCGTGACGTGGCCAGCCCTTCGGCGTTGTACGTCCTGATGCCGATGCGGGTCTGACCAGGACCCGACCCGCTG
CGTCTTCGATCCGCTGCATC

Downstream 100 bases:

>100_bases
TCGCGTCTTTCGACCACGATCCCAATCTGGAGCATCTGCCCGGTATGTCCGATCAATCCAATCCCGTTCAGAAAACCGAT
GCGGATATGCCAGACGCGGA

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MARLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMARHGTTIWGVAARFTGPDG
APFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVWLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQ
AMGQRNRLLAAGRADPGWLSALEDSMARHAVAASAARLALVTQLNGEAAHTVPDGFPPARLDILCPIVQQLRDRPALAVE
DWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAHAALMTRSRGEAPMILLDEPLV
HLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAGFVSPRNGALDGKPV

Sequences:

>Translated_373_residues
MARLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMARHGTTIWGVAARFTGPDG
APFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVWLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQ
AMGQRNRLLAAGRADPGWLSALEDSMARHAVAASAARLALVTQLNGEAAHTVPDGFPPARLDILCPIVQQLRDRPALAVE
DWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAHAALMTRSRGEAPMILLDEPLV
HLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAGFVSPRNGALDGKPV
>Mature_372_residues
ARLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMARHGTTIWGVAARFTGPDGA
PFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVWLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQA
MGQRNRLLAAGRADPGWLSALEDSMARHAVAASAARLALVTQLNGEAAHTVPDGFPPARLDILCPIVQQLRDRPALAVED
WLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAHAALMTRSRGEAPMILLDEPLVH
LDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAGFVSPRNGALDGKPV

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- InterPro:   IPR007406 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 39870; Mature: 39739

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAE
CCCCHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
MARHGTTIWGVAARFTGPDGAPFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVW
HHHCCCEEEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEE
LTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWLS
CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEECCCCCHHHHH
ALEDSMARHAVAASAARLALVTQLNGEAAHTVPDGFPPARLDILCPIVQQLRDRPALAVE
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
DWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAHA
HHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAGF
HHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCC
VSPRNGALDGKPV
CCCCCCCCCCCCC
>Mature Secondary Structure 
ARLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAE
CCCHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
MARHGTTIWGVAARFTGPDGAPFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVW
HHHCCCEEEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEE
LTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWLS
CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEECCCCCHHHHH
ALEDSMARHAVAASAARLALVTQLNGEAAHTVPDGFPPARLDILCPIVQQLRDRPALAVE
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
DWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAHA
HHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAGF
HHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCC
VSPRNGALDGKPV
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA