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The map label for this gene is arnC [H]

Identifier: 162146971

GI number: 162146971

Start: 1173883

End: 1174632

Strand: Reverse

Name: arnC [H]

Synonym: GDI_1176

Alternate gene names: 162146971

Gene position: 1174632-1173883 (Counterclockwise)

Preceding gene: 162146972

Following gene: 162146970

Centisome position: 29.78

GC content: 69.6

Gene sequence:

>750_bases
GTGTCCTCATCCCCTGATCGTTCGGAGCCCGTCCTTTCGATCGTGGCGGCCGTCCTGAACGAGGCGGAGAACATTCGGCC
CGTCTGTGCCGAACTGGCCGAATCGCTCCGCTCCCTGCCGCCGTGCGAAGTCGTCTTCGTCGATGACGGCAGCACCGACG
GCACCGTGGACGCCCTGCTGGCTGCCCGGGCCGAGGGTGTGCTGCCCGGCCTGCGGGTCCTCTGCCACGATCGCCGGCTT
GGAAAATCCGCCGCCCTGCGTACGGGGATCGAGGCCGCGCACGGGCGCTGGATCGCGACGATCGACGGCGACGGGCAGGA
CGATCCTTCGGAAATCGCCGATATGCTGGACCTGGCGCGGAATGCGCCGGGCCGCGCGCCGCTGGTCGTGGGTGTCCGGC
TGCGGCGCCGCGATACGCTGTCGCGCCGGTTTGCGACGCGCTTTGCCAACGGCCTGCGCGGCCGGCTGCTGCGCGACGGC
TGCCCCGATACCGGCGCACCGCTGAAGGTATTCCTGCGCGCGGATTTCCTGCGCCTGCCGCAGTTCGAGGGGCTGCATCG
CTTCCTGCCCGCGCTGCTGGGGCGGCAGGGCGTGCCCCTGCTGTGCCGGCCGGTGCGGCACCGCAACCGTCTGCACGGGC
ATTCCAAATACACCAACCTGAACCGCGCGCTGGTCGGTATCCGCGACCTTCTGGGCGTGATGTGGCTGAACAACCGCACA
CGGCTTCCCCATCATATCACCGAACGCTAG

Upstream 100 bases:

>100_bases
TTCCGGCCGGCGCGGACCATGCGATCGTCGATCGGGCGATCGCCGACCTGCCGTCGGCCCTGTCCCACCGCGCCGCCTGA
CCGGGGTCGCCCTTCTGACC

Downstream 100 bases:

>100_bases
GGCGCGGCGGATGACGCGGCTGACCTTGCGGCATTACGTCATGCTGGCGTTGTGTACGTTCATGATCTTCCTGCCCGGGC
GGGCCAGCCTGCCGCCCCTG

Product: glycosyl transferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSSSPDRSEPVLSIVAAVLNEAENIRPVCAELAESLRSLPPCEVVFVDDGSTDGTVDALLAARAEGVLPGLRVLCHDRRL
GKSAALRTGIEAAHGRWIATIDGDGQDDPSEIADMLDLARNAPGRAPLVVGVRLRRRDTLSRRFATRFANGLRGRLLRDG
CPDTGAPLKVFLRADFLRLPQFEGLHRFLPALLGRQGVPLLCRPVRHRNRLHGHSKYTNLNRALVGIRDLLGVMWLNNRT
RLPHHITER

Sequences:

>Translated_249_residues
MSSSPDRSEPVLSIVAAVLNEAENIRPVCAELAESLRSLPPCEVVFVDDGSTDGTVDALLAARAEGVLPGLRVLCHDRRL
GKSAALRTGIEAAHGRWIATIDGDGQDDPSEIADMLDLARNAPGRAPLVVGVRLRRRDTLSRRFATRFANGLRGRLLRDG
CPDTGAPLKVFLRADFLRLPQFEGLHRFLPALLGRQGVPLLCRPVRHRNRLHGHSKYTNLNRALVGIRDLLGVMWLNNRT
RLPHHITER
>Mature_248_residues
SSSPDRSEPVLSIVAAVLNEAENIRPVCAELAESLRSLPPCEVVFVDDGSTDGTVDALLAARAEGVLPGLRVLCHDRRLG
KSAALRTGIEAAHGRWIATIDGDGQDDPSEIADMLDLARNAPGRAPLVVGVRLRRRDTLSRRFATRFANGLRGRLLRDGC
PDTGAPLKVFLRADFLRLPQFEGLHRFLPALLGRQGVPLLCRPVRHRNRLHGHSKYTNLNRALVGIRDLLGVMWLNNRTR
LPHHITER

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=215, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 27464; Mature: 27333

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSPDRSEPVLSIVAAVLNEAENIRPVCAELAESLRSLPPCEVVFVDDGSTDGTVDALL
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
AARAEGVLPGLRVLCHDRRLGKSAALRTGIEAAHGRWIATIDGDGQDDPSEIADMLDLAR
HHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
NAPGRAPLVVGVRLRRRDTLSRRFATRFANGLRGRLLRDGCPDTGAPLKVFLRADFLRLP
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
QFEGLHRFLPALLGRQGVPLLCRPVRHRNRLHGHSKYTNLNRALVGIRDLLGVMWLNNRT
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
RLPHHITER
CCCCCCCCC
>Mature Secondary Structure 
SSSPDRSEPVLSIVAAVLNEAENIRPVCAELAESLRSLPPCEVVFVDDGSTDGTVDALL
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
AARAEGVLPGLRVLCHDRRLGKSAALRTGIEAAHGRWIATIDGDGQDDPSEIADMLDLAR
HHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
NAPGRAPLVVGVRLRRRDTLSRRFATRFANGLRGRLLRDGCPDTGAPLKVFLRADFLRLP
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
QFEGLHRFLPALLGRQGVPLLCRPVRHRNRLHGHSKYTNLNRALVGIRDLLGVMWLNNRT
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
RLPHHITER
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA