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The map label for this gene is yddU [C]

Identifier: 162146963

GI number: 162146963

Start: 1166589

End: 1168610

Strand: Reverse

Name: yddU [C]

Synonym: GDI_1168

Alternate gene names: 162146963

Gene position: 1168610-1166589 (Counterclockwise)

Preceding gene: 162146964

Following gene: 162146961

Centisome position: 29.63

GC content: 65.97

Gene sequence:

>2022_bases
ATGGCGCTTCTGACGGATTCCTCGCAATTCTCCGGTGTCATGCCGGGCACTTTCGCCGTGGTCCCGATCATGTCTGATCG
GTTCGTCTGTCTTCTCGACCCATCGGGCCGTGTCGCGGCCTGGGGCGCGGACGCCCGCAACCTGACGGGCTATACGGCCG
ACGACATGCTGGGCCGTCCTCTGGCCGCGCTGTTTTCGCCGTGCCGGGGCGCCGGGGAAACAGGGGCCGCCCTTCCGGTC
CAGGGACAGGCCGAGCGGGTCGAACTGATCGCCCGCAGGGACGGCACCCGGTTCCACGCCCGCATCGAATGTCATGCCCT
GGACCATTCCCGCCATATCGGCGCGATCCTGGCGGACATGCCGGCGGCCGTCGTCGTGGTGCAGGATGTGTCGGCGGCGG
GTGGGCCGGCGCAAGGTGCCGATCCGGCGCTGCGTCCGGTCCTGGACCGGATTCCCGACGGCATCGCCCTGTTCGGGGCG
GATTGCGGCCTGCTCTATCGCAATGACCTGTTCGGGAGCACGCTTGCCCTGCCGGATGACCTGCTGTGGCCCGGTACCCA
GGCCCGGGCGATCATGGCGGTGCAGTCCGGCGATACCGCGCGGACGGCGGACGGTGCGTGCGACTGGACGACCGAAATCC
TGCGGCAGGGGCGGTCGCTGCGCCTGTCCTGGACCGGGCTGCCGGATGGGCGCCGGCTGCGGCTGTGCCGGGACCTGACG
GACCTGCGCCGGTCGGAAAGCCGCGCGCGCTTTCTGGAACAGCATGACGATGTCACGGGTCTTGCCAACCTCCCGGGATT
GCAGACGCATCTCCAGATGTTGTGCGAACGGCCGTCGGAACGCTTTACGGTCCTGTATTTCGACCTGTTCGGCTTCAAGC
GCATCAACAACACCATGGGCCACGCGGCAGGGGACGAATTGCTGCGCCTCGTCGCCGACCGGGTGCGCCGGTTGATGGAG
CCGGACGACGTCGCCGCCCACATCCGGGGCAATAAATTCGCGCTGGTCATGCGGGCGGAACAGGATAGCGACATGATCTG
GGCGCACGCGCAGCATCTGCGCAGCGTCCTGTCGCGCCCGATGTCGGTCCTGGGCCACGACGTCACGGTCGGGGTCGGGA
TCGGCGTGGTGCGCTTTCCCGCCGACGGCAGCGATCGCGATACCCTGATGTGGAACGCCGATATCGCGCTTCAGTACGCC
AAGGACGGCAAGGGCGAGGGAATCCGGTTCTACAATCCGGTCATGGACCGCATGCGCCAGAAACGCATGGACCTGGAACG
CGACCTGCAGCGTGCGCTGGCGCAGGATGAATTCGTCCTGTTCTACCAGCCTTTTCTGAATATCGGGACCCATCGCATCG
TGGGTGTCGAGGCGCTGATCCGCTGGATGCATCCCGTCCGTGGCCTGATCCCGCCAGGCGACTTCATCCCGGTGGCCGAG
GGCATGGGCCTGATGTACGATATCGGCGTCTGGACGCTGAACACCGCATGCCGTCAGGCGTCTGCCTGGCCGGAGGATAT
CGTCGTTTCGGTCAATGTGTCGGCGGCGCAGTTCCGGCATGACGGACTGGTCGAAACCGTGGCCCAGGCGCTTCTGGGGT
CGGGGCTGGATGCCGGGCGCCTGGAACTGGAAATTACCGAAACCGCGATGATCGACGACGTGCCGCGCGCGGCACGGGTG
CTGCGGCAGTTGCGCGAGATGGGCGTGAAGATCGCGCTGGACGATTTCGGAACGGGGTATTCCTCGCTCAGTTTCCTGCA
GAGCCTGCCCTTTACCCGGATCAAGATCGATCGCAGCTTCGTCCGCGAACTGGGCCAGGGTGTCGGCGACGGGGCGGCGA
TCGTGGGGGCGATTACCAGCCTGTGCGGCAGCCTGAACGTGGTCGCCACCGCCGAGGGCGTGGAAACGCAGGAACAGTTC
GATTACCTCAAGCAGATCAATTGTTCCGAAATCCAGGGCTTTTTCATCTGCCGGCCCCGTCCGGCCTCCGAAATCCAGCC
GCTGCTGGATCAGATCAACTGA

Upstream 100 bases:

>100_bases
TTTCCTTCCCATCTTTCGGACCAGTACCGGTCGCCGGACCCTTCATGACAGGTGGATATTTCTTCAGCGGTTCGGCGGAG
TCTGAATTGAATGGCGAGAC

Downstream 100 bases:

>100_bases
TCGTCGCCGGGTCCCGGATCCGTCCGGTGGCCGCAATGGCGGGCATAGTCGCTGGGCGTCAGGCCGGTCAGCGCCCGGAA
GCGTGCCGTCAGGTGGCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 672

Protein sequence:

>673_residues
MALLTDSSQFSGVMPGTFAVVPIMSDRFVCLLDPSGRVAAWGADARNLTGYTADDMLGRPLAALFSPCRGAGETGAALPV
QGQAERVELIARRDGTRFHARIECHALDHSRHIGAILADMPAAVVVVQDVSAAGGPAQGADPALRPVLDRIPDGIALFGA
DCGLLYRNDLFGSTLALPDDLLWPGTQARAIMAVQSGDTARTADGACDWTTEILRQGRSLRLSWTGLPDGRRLRLCRDLT
DLRRSESRARFLEQHDDVTGLANLPGLQTHLQMLCERPSERFTVLYFDLFGFKRINNTMGHAAGDELLRLVADRVRRLME
PDDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRPMSVLGHDVTVGVGIGVVRFPADGSDRDTLMWNADIALQYA
KDGKGEGIRFYNPVMDRMRQKRMDLERDLQRALAQDEFVLFYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAE
GMGLMYDIGVWTLNTACRQASAWPEDIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGRLELEITETAMIDDVPRAARV
LRQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSFVRELGQGVGDGAAIVGAITSLCGSLNVVATAEGVETQEQF
DYLKQINCSEIQGFFICRPRPASEIQPLLDQIN

Sequences:

>Translated_673_residues
MALLTDSSQFSGVMPGTFAVVPIMSDRFVCLLDPSGRVAAWGADARNLTGYTADDMLGRPLAALFSPCRGAGETGAALPV
QGQAERVELIARRDGTRFHARIECHALDHSRHIGAILADMPAAVVVVQDVSAAGGPAQGADPALRPVLDRIPDGIALFGA
DCGLLYRNDLFGSTLALPDDLLWPGTQARAIMAVQSGDTARTADGACDWTTEILRQGRSLRLSWTGLPDGRRLRLCRDLT
DLRRSESRARFLEQHDDVTGLANLPGLQTHLQMLCERPSERFTVLYFDLFGFKRINNTMGHAAGDELLRLVADRVRRLME
PDDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRPMSVLGHDVTVGVGIGVVRFPADGSDRDTLMWNADIALQYA
KDGKGEGIRFYNPVMDRMRQKRMDLERDLQRALAQDEFVLFYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAE
GMGLMYDIGVWTLNTACRQASAWPEDIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGRLELEITETAMIDDVPRAARV
LRQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSFVRELGQGVGDGAAIVGAITSLCGSLNVVATAEGVETQEQF
DYLKQINCSEIQGFFICRPRPASEIQPLLDQIN
>Mature_672_residues
ALLTDSSQFSGVMPGTFAVVPIMSDRFVCLLDPSGRVAAWGADARNLTGYTADDMLGRPLAALFSPCRGAGETGAALPVQ
GQAERVELIARRDGTRFHARIECHALDHSRHIGAILADMPAAVVVVQDVSAAGGPAQGADPALRPVLDRIPDGIALFGAD
CGLLYRNDLFGSTLALPDDLLWPGTQARAIMAVQSGDTARTADGACDWTTEILRQGRSLRLSWTGLPDGRRLRLCRDLTD
LRRSESRARFLEQHDDVTGLANLPGLQTHLQMLCERPSERFTVLYFDLFGFKRINNTMGHAAGDELLRLVADRVRRLMEP
DDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRPMSVLGHDVTVGVGIGVVRFPADGSDRDTLMWNADIALQYAK
DGKGEGIRFYNPVMDRMRQKRMDLERDLQRALAQDEFVLFYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAEG
MGLMYDIGVWTLNTACRQASAWPEDIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGRLELEITETAMIDDVPRAARVL
RQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSFVRELGQGVGDGAAIVGAITSLCGSLNVVATAEGVETQEQFD
YLKQINCSEIQGFFICRPRPASEIQPLLDQIN

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=38.0184331797235, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=33.2558139534884, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI226510982, Length=371, Percent_Identity=31.8059299191375, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=37.603305785124, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790496, Length=259, Percent_Identity=33.2046332046332, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=36.4, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=31.1475409836066, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=32.9218106995885, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI1786507, Length=292, Percent_Identity=31.8493150684932, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788849, Length=364, Percent_Identity=28.021978021978, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=29.4605809128631, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=369, Percent_Identity=23.8482384823848, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=363, Percent_Identity=23.1404958677686, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 73752; Mature: 73621

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLTDSSQFSGVMPGTFAVVPIMSDRFVCLLDPSGRVAAWGADARNLTGYTADDMLGRP
CCEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHCCC
LAALFSPCRGAGETGAALPVQGQAERVELIARRDGTRFHARIECHALDHSRHIGAILADM
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHCC
PAAVVVVQDVSAAGGPAQGADPALRPVLDRIPDGIALFGADCGLLYRNDLFGSTLALPDD
CEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCCCCCC
LLWPGTQARAIMAVQSGDTARTADGACDWTTEILRQGRSLRLSWTGLPDGRRLRLCRDLT
CCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
DLRRSESRARFLEQHDDVTGLANLPGLQTHLQMLCERPSERFTVLYFDLFGFKRINNTMG
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHC
HAAGDELLRLVADRVRRLMEPDDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRP
CCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
MSVLGHDVTVGVGIGVVRFPADGSDRDTLMWNADIALQYAKDGKGEGIRFYNPVMDRMRQ
HHHHCCCEEEEECCEEEEECCCCCCCCEEEEECCEEEEECCCCCCCCEEEHHHHHHHHHH
KRMDLERDLQRALAQDEFVLFYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAE
HHCCHHHHHHHHHCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEHHC
GMGLMYDIGVWTLNTACRQASAWPEDIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGR
CCCEEEECCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHCCCCCCE
LELEITETAMIDDVPRAARVLRQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSF
EEEEEECHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHH
VRELGQGVGDGAAIVGAITSLCGSLNVVATAEGVETQEQFDYLKQINCSEIQGFFICRPR
HHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHHCCEEEEECCC
PASEIQPLLDQIN
CHHHHHHHHHHCC
>Mature Secondary Structure 
ALLTDSSQFSGVMPGTFAVVPIMSDRFVCLLDPSGRVAAWGADARNLTGYTADDMLGRP
CEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHCCC
LAALFSPCRGAGETGAALPVQGQAERVELIARRDGTRFHARIECHALDHSRHIGAILADM
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHCC
PAAVVVVQDVSAAGGPAQGADPALRPVLDRIPDGIALFGADCGLLYRNDLFGSTLALPDD
CEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCCCCCC
LLWPGTQARAIMAVQSGDTARTADGACDWTTEILRQGRSLRLSWTGLPDGRRLRLCRDLT
CCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
DLRRSESRARFLEQHDDVTGLANLPGLQTHLQMLCERPSERFTVLYFDLFGFKRINNTMG
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHC
HAAGDELLRLVADRVRRLMEPDDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRP
CCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
MSVLGHDVTVGVGIGVVRFPADGSDRDTLMWNADIALQYAKDGKGEGIRFYNPVMDRMRQ
HHHHCCCEEEEECCEEEEECCCCCCCCEEEEECCEEEEECCCCCCCCEEEHHHHHHHHHH
KRMDLERDLQRALAQDEFVLFYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAE
HHCCHHHHHHHHHCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEHHC
GMGLMYDIGVWTLNTACRQASAWPEDIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGR
CCCEEEECCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHCCCCCCE
LELEITETAMIDDVPRAARVLRQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSF
EEEEEECHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHH
VRELGQGVGDGAAIVGAITSLCGSLNVVATAEGVETQEQFDYLKQINCSEIQGFFICRPR
HHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHHCCEEEEECCC
PASEIQPLLDQIN
CHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]