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The map label for this gene is trbB [H]

Identifier: 162146837

GI number: 162146837

Start: 1033720

End: 1034688

Strand: Reverse

Name: trbB [H]

Synonym: GDI_1019

Alternate gene names: 162146837

Gene position: 1034688-1033720 (Counterclockwise)

Preceding gene: 162146840

Following gene: 162146836

Centisome position: 26.23

GC content: 70.69

Gene sequence:

>969_bases
GTGTCTATCGCTCCCTTCCGCTCCGAAGCCGTCGTCCGAGGCACGCGCATGCTGCGCACCGCACTCGGCCCGGCGATTGC
CGGCCATCTCGACGATCCGTCGATCGTCGAAGTGATGCTCAATCCCGACGGGAAACTGTGGATCGACCGGCTGGCCGGCG
GAATGGAGGACACCGGCACCCGGATCGGGCCGGCCGACGCCGAGCGGATCGTCCGCCTGGTCGCCCACCATGTCGGCGTC
GAGGTGCATCCCGCCAGCCCCCGCGTCTCCGCCGAACTGCCGGGAAGCGGGGAGCGGTTCGAAGGGCTGGTGCCCCCGGT
GGTGGCCGCACCCTGCTTTGCCATCCGGCGCCCAGCCGTCGCGGTGTTCTCGCTCGGCGATTACGTGACCGCCGGGATCA
TGACCGCCGCACAGGCCAAATTTCTGCACCGCGCCGTCGCGGAGCGGCGGAACATTCTCGTCGCCGGCGGCACCTCCACC
GGCAAGACCACGCTGGTCAACGCCCTGCTGGCCGAGATCGCCCAGACCGGCGACCGGGTGGTGCTGATCGAGGATACCCG
CGAGTTGCAATGCGCGGCGCCCAATCTGGTCGCCCTGCGCACCAAAGACGGGGCTGCCTCGCTCTCCGACCTGGTCCGTT
CCTCGCTGCGCCTGCGTCCCGACCGGATTCCGATCGGCGAGGTGCGCGGCGCCGAGGCGCTCGACCTGCTCAAGGCCTGG
GGCACCGGTCATCCCGGCGGCGTCGGCACCCTGCATGCCGGTTCGGCGATCGGCGCGCTGCGCCGGCTGGAGCAACTGAT
CCAGGAAGCCGTCGTCACCGTGCCGCGCGCCCTGATCGCCGAGACCATCGACGTCATCGCGGTGCTGTCCGGGCGCGGCA
GCGCGCGCCGGCTGACTGAACTCGCCACCGTCCAGGGCCTGAGCCCCGATGGAGACTACATCCTCGCACCTGCCGGAGAC
CCGTCATGA

Upstream 100 bases:

>100_bases
TACGGTCCCAGAGACTTGTTGCGCTGCCGTGTTCCTGCCTCTTTCTAATCGATCCCGCTGATCCATCGCCTCCCTCTGGA
GGCTAATCGCGGGGTTCCCG

Downstream 100 bases:

>100_bases
CCCGCATGATTGTCCTGCGCCATCGCTTTGCTGTGGCTGGCGCCACCCTCTCGCTCGCCCTGCTGTCGGCCCCGGCCTAT
GCCGCCGGTTCGAGCATGCC

Product: type II/IV secretion system protein trbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSIAPFRSEAVVRGTRMLRTALGPAIAGHLDDPSIVEVMLNPDGKLWIDRLAGGMEDTGTRIGPADAERIVRLVAHHVGV
EVHPASPRVSAELPGSGERFEGLVPPVVAAPCFAIRRPAVAVFSLGDYVTAGIMTAAQAKFLHRAVAERRNILVAGGTST
GKTTLVNALLAEIAQTGDRVVLIEDTRELQCAAPNLVALRTKDGAASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGVGTLHAGSAIGALRRLEQLIQEAVVTVPRALIAETIDVIAVLSGRGSARRLTELATVQGLSPDGDYILAPAGD
PS

Sequences:

>Translated_322_residues
MSIAPFRSEAVVRGTRMLRTALGPAIAGHLDDPSIVEVMLNPDGKLWIDRLAGGMEDTGTRIGPADAERIVRLVAHHVGV
EVHPASPRVSAELPGSGERFEGLVPPVVAAPCFAIRRPAVAVFSLGDYVTAGIMTAAQAKFLHRAVAERRNILVAGGTST
GKTTLVNALLAEIAQTGDRVVLIEDTRELQCAAPNLVALRTKDGAASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGVGTLHAGSAIGALRRLEQLIQEAVVTVPRALIAETIDVIAVLSGRGSARRLTELATVQGLSPDGDYILAPAGD
PS
>Mature_321_residues
SIAPFRSEAVVRGTRMLRTALGPAIAGHLDDPSIVEVMLNPDGKLWIDRLAGGMEDTGTRIGPADAERIVRLVAHHVGVE
VHPASPRVSAELPGSGERFEGLVPPVVAAPCFAIRRPAVAVFSLGDYVTAGIMTAAQAKFLHRAVAERRNILVAGGTSTG
KTTLVNALLAEIAQTGDRVVLIEDTRELQCAAPNLVALRTKDGAASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGVGTLHAGSAIGALRRLEQLIQEAVVTVPRALIAETIDVIAVLSGRGSARRLTELATVQGLSPDGDYILAPAGDP
S

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 33673; Mature: 33542

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAPFRSEAVVRGTRMLRTALGPAIAGHLDDPSIVEVMLNPDGKLWIDRLAGGMEDTGT
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCC
RIGPADAERIVRLVAHHVGVEVHPASPRVSAELPGSGERFEGLVPPVVAAPCFAIRRPAV
CCCCHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
AVFSLGDYVTAGIMTAAQAKFLHRAVAERRNILVAGGTSTGKTTLVNALLAEIAQTGDRV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEE
VLIEDTRELQCAAPNLVALRTKDGAASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGVGTLHAGSAIGALRRLEQLIQEAVVTVPRALIAETIDVIAVLSGRGSARRLTE
CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LATVQGLSPDGDYILAPAGDPS
HHHHCCCCCCCCEEEECCCCCC
>Mature Secondary Structure 
SIAPFRSEAVVRGTRMLRTALGPAIAGHLDDPSIVEVMLNPDGKLWIDRLAGGMEDTGT
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCC
RIGPADAERIVRLVAHHVGVEVHPASPRVSAELPGSGERFEGLVPPVVAAPCFAIRRPAV
CCCCHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
AVFSLGDYVTAGIMTAAQAKFLHRAVAERRNILVAGGTSTGKTTLVNALLAEIAQTGDRV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEE
VLIEDTRELQCAAPNLVALRTKDGAASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGVGTLHAGSAIGALRRLEQLIQEAVVTVPRALIAETIDVIAVLSGRGSARRLTE
CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LATVQGLSPDGDYILAPAGDPS
HHHHCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]