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The map label for this gene is trbF [H]

Identifier: 162146831

GI number: 162146831

Start: 1027735

End: 1028415

Strand: Reverse

Name: trbF [H]

Synonym: GDI_1013

Alternate gene names: 162146831

Gene position: 1028415-1027735 (Counterclockwise)

Preceding gene: 162146832

Following gene: 162146830

Centisome position: 26.07

GC content: 66.52

Gene sequence:

>681_bases
ATGTTCCTTCGCCCCAGCATACGGTTCGGCAAAACACCAGAACCGGAAACGCCCTATCATAAGGCCGGACAGGTCTGGGA
CGACCGCATCGGTTTGGCCCGCGTCCAGGCGCGTGACTGGCGGCTGGCCTTCTTCGGCTGCCTGGCATTGAGCGGCGGTC
TGGCGGCCGGGCTGGTCTGGCAGTCGGCGCGGGGCACCATCACGCCGTGGGTAGTGCAGATCGACCATCTTGGTCAGGCG
CAGGCCGTGGGGCCGGCGACGGCCGCCTATCGGCCGACCGATCCGCAGATCGCCTGGTATCTGGCGCGCTTCATCTCCGA
GGTGCGCGGCATCCCTGCCGATCCGGTGGTGCTGCGGCAGAACTGGCTCGACGCCTATAACTACGTCACCGATCGCGGCG
CGCTGGCCCTGAATGATTATGCCCGCACCAACGATCCGTTCAGCCGGATCGGCAGGATGCAGGTTGCGGTCGAGATCGCC
AGCGTGATCCGCGCCTCCGATGACAGTTTCCGGGTGGAGTGGGTCGAGCGCCGCTATATCGACGGCGCGCTGGCCACCAC
TGAGCGCTGGAGCGCGATCCTCACCATCGTCGTCGCCACGCCCACCGATGCCGAGCGGCTGCGCAAGAACCCGCTCGGCA
TCTACATCCACGCCCTCAACTGGTCCAGGGAACTCGGCTGA

Upstream 100 bases:

>100_bases
ACCGGATCAGGGGCGGGGCTGACGCCGCCGCGCAGGCGATCAAGGGCGGCGACCGGCCCAGCGGCGGCCACGACGTCGAT
CTCTCGGAGGGAGAATAACC

Downstream 100 bases:

>100_bases
TGCGCACCCTCAACACAATCGCGCCGTTCATGATCCTGTTGGTGCCGCTGGCGGCCTGCTCGTCGTGGAAGCCGCCTGTC
ATCAGATACGACGATACGCC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MFLRPSIRFGKTPEPETPYHKAGQVWDDRIGLARVQARDWRLAFFGCLALSGGLAAGLVWQSARGTITPWVVQIDHLGQA
QAVGPATAAYRPTDPQIAWYLARFISEVRGIPADPVVLRQNWLDAYNYVTDRGALALNDYARTNDPFSRIGRMQVAVEIA
SVIRASDDSFRVEWVERRYIDGALATTERWSAILTIVVATPTDAERLRKNPLGIYIHALNWSRELG

Sequences:

>Translated_226_residues
MFLRPSIRFGKTPEPETPYHKAGQVWDDRIGLARVQARDWRLAFFGCLALSGGLAAGLVWQSARGTITPWVVQIDHLGQA
QAVGPATAAYRPTDPQIAWYLARFISEVRGIPADPVVLRQNWLDAYNYVTDRGALALNDYARTNDPFSRIGRMQVAVEIA
SVIRASDDSFRVEWVERRYIDGALATTERWSAILTIVVATPTDAERLRKNPLGIYIHALNWSRELG
>Mature_226_residues
MFLRPSIRFGKTPEPETPYHKAGQVWDDRIGLARVQARDWRLAFFGCLALSGGLAAGLVWQSARGTITPWVVQIDHLGQA
QAVGPATAAYRPTDPQIAWYLARFISEVRGIPADPVVLRQNWLDAYNYVTDRGALALNDYARTNDPFSRIGRMQVAVEIA
SVIRASDDSFRVEWVERRYIDGALATTERWSAILTIVVATPTDAERLRKNPLGIYIHALNWSRELG

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25349; Mature: 25349

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLRPSIRFGKTPEPETPYHKAGQVWDDRIGLARVQARDWRLAFFGCLALSGGLAAGLVW
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHCCHHHHHHHHHHHCCCHHHHHEE
QSARGTITPWVVQIDHLGQAQAVGPATAAYRPTDPQIAWYLARFISEVRGIPADPVVLRQ
ECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
NWLDAYNYVTDRGALALNDYARTNDPFSRIGRMQVAVEIASVIRASDDSFRVEWVERRYI
HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
DGALATTERWSAILTIVVATPTDAERLRKNPLGIYIHALNWSRELG
CCHHHHHHHCEEEEEEEEECCCCHHHHHCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MFLRPSIRFGKTPEPETPYHKAGQVWDDRIGLARVQARDWRLAFFGCLALSGGLAAGLVW
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHCCHHHHHHHHHHHCCCHHHHHEE
QSARGTITPWVVQIDHLGQAQAVGPATAAYRPTDPQIAWYLARFISEVRGIPADPVVLRQ
ECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
NWLDAYNYVTDRGALALNDYARTNDPFSRIGRMQVAVEIASVIRASDDSFRVEWVERRYI
HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
DGALATTERWSAILTIVVATPTDAERLRKNPLGIYIHALNWSRELG
CCHHHHHHHCEEEEEEEEECCCCHHHHHCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]