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The map label for this gene is lin [H]

Identifier: 162146240

GI number: 162146240

Start: 412339

End: 413163

Strand: Direct

Name: lin [H]

Synonym: GDI_0415

Alternate gene names: 162146240

Gene position: 412339-413163 (Clockwise)

Preceding gene: 162146239

Following gene: 162146247

Centisome position: 10.45

GC content: 65.21

Gene sequence:

>825_bases
ATGAACAATCTGCATCGGGAACTCGCGCCGATTTCTGAAGCCGCATGGGCGCAGATCGAGGAAGAGGCCTCCCGCACGCT
CAAGCGCTACCTGGCCGCCCGGCGCGTGGTCGATGTGCCGGAGGCGAAGGGATTCGGGTTTTCGGCTGTCGGCACCGGCC
ATGTCGAGCGCATCGACGCACCCGGAAGCGATATTCGCGCCGTCCGGCGCAACGTGCTGCCGCTGGTGGAACTGCGCGTG
CCCTTCACGCTGGCGCGGGACGCGATCGACGATGTGGAGCGTGGCGCGGGTGATTCGGACTGGCAACCCCTGAAGGACGC
CGCGAAGAAAATCGCGTTCGCCGAAGACCGGGCGGTATTCGACGGTTACGCCGCTGCCGGAATCCTGGGCCTTCGTGAGG
GCACCTCGAACCCGAAACTGGCCCTGCCGTCTTCCGCCAGCGACTATCCGGCGGCCATCGCGGCGGCGCTGAACCAGCTT
CGCCTTGCCGGCGTCAACGGACCCTACGCCGTGGTGCTCGGCGCCGGCGTCTATACCGCGCTGAGCGGCGGCGACGATGA
GGGATATCCCGTCTTCCGGCATATCGAGAGCCTGATCGACGGCAAGATCGTCTGGGCCCCGGCGATCGAGGGGGGCTTCG
TCCTGTCCACCCGTGGCGGCGATTTCGAACTGGATATCGGCCAGGACTTTTCCATCGGGTACAGCAGCCATTCCGCGGAT
TCCGTGGAGCTTTACCTTCAGGAGAGCTTTACGTTCCAGTTGCTGACGACCGAGGCATCCGTGGCATTGTCAGCTGCGAA
GAACGAAGCGCCCTCGGCCCCGTAA

Upstream 100 bases:

>100_bases
GGCTGTGCTGCGGACGGGTCCGGGGCAGGGGGAAGCGCCCCCCCGTCGCCTTCGGCATACGGCTCGCTCGGAATCGGCTC
ATTGAAGGAAAAAGTCTGAC

Downstream 100 bases:

>100_bases
CGCGAACCCGCCAGGGCCTGTGGCCCTGGCCCCGATGACGGGTCAGTACCCGATGGTCCTGTCCACCAGGCCCTTGAGGG
GTTCGCCCTTTCGGTAGCGT

Product: bacteriocin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNNLHRELAPISEAAWAQIEEEASRTLKRYLAARRVVDVPEAKGFGFSAVGTGHVERIDAPGSDIRAVRRNVLPLVELRV
PFTLARDAIDDVERGAGDSDWQPLKDAAKKIAFAEDRAVFDGYAAAGILGLREGTSNPKLALPSSASDYPAAIAAALNQL
RLAGVNGPYAVVLGAGVYTALSGGDDEGYPVFRHIESLIDGKIVWAPAIEGGFVLSTRGGDFELDIGQDFSIGYSSHSAD
SVELYLQESFTFQLLTTEASVALSAAKNEAPSAP

Sequences:

>Translated_274_residues
MNNLHRELAPISEAAWAQIEEEASRTLKRYLAARRVVDVPEAKGFGFSAVGTGHVERIDAPGSDIRAVRRNVLPLVELRV
PFTLARDAIDDVERGAGDSDWQPLKDAAKKIAFAEDRAVFDGYAAAGILGLREGTSNPKLALPSSASDYPAAIAAALNQL
RLAGVNGPYAVVLGAGVYTALSGGDDEGYPVFRHIESLIDGKIVWAPAIEGGFVLSTRGGDFELDIGQDFSIGYSSHSAD
SVELYLQESFTFQLLTTEASVALSAAKNEAPSAP
>Mature_274_residues
MNNLHRELAPISEAAWAQIEEEASRTLKRYLAARRVVDVPEAKGFGFSAVGTGHVERIDAPGSDIRAVRRNVLPLVELRV
PFTLARDAIDDVERGAGDSDWQPLKDAAKKIAFAEDRAVFDGYAAAGILGLREGTSNPKLALPSSASDYPAAIAAALNQL
RLAGVNGPYAVVLGAGVYTALSGGDDEGYPVFRHIESLIDGKIVWAPAIEGGFVLSTRGGDFELDIGQDFSIGYSSHSAD
SVELYLQESFTFQLLTTEASVALSAAKNEAPSAP

Specific function: Bacteriocin that has antimicrobial activity against a wide range of Gram-positive bacteria, including L.monocytogenes, B.cereus and S.aureus. May have a protease activity [H]

COG id: COG1659

COG function: function code S; Uncharacterized protein, linocin/CFP29 homolog

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007544 [H]

Pfam domain/function: PF04454 Linocin_M18 [H]

EC number: NA

Molecular weight: Translated: 29088; Mature: 29088

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLHRELAPISEAAWAQIEEEASRTLKRYLAARRVVDVPEAKGFGFSAVGTGHVERIDA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECC
PGSDIRAVRRNVLPLVELRVPFTLARDAIDDVERGAGDSDWQPLKDAAKKIAFAEDRAVF
CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH
DGYAAAGILGLREGTSNPKLALPSSASDYPAAIAAALNQLRLAGVNGPYAVVLGAGVYTA
CCHHHHHEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEECCHHEE
LSGGDDEGYPVFRHIESLIDGKIVWAPAIEGGFVLSTRGGDFELDIGQDFSIGYSSHSAD
ECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCCCCC
SVELYLQESFTFQLLTTEASVALSAAKNEAPSAP
CEEEEEECCEEEEEEECCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNNLHRELAPISEAAWAQIEEEASRTLKRYLAARRVVDVPEAKGFGFSAVGTGHVERIDA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECC
PGSDIRAVRRNVLPLVELRVPFTLARDAIDDVERGAGDSDWQPLKDAAKKIAFAEDRAVF
CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHH
DGYAAAGILGLREGTSNPKLALPSSASDYPAAIAAALNQLRLAGVNGPYAVVLGAGVYTA
CCHHHHHEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEECCHHEE
LSGGDDEGYPVFRHIESLIDGKIVWAPAIEGGFVLSTRGGDFELDIGQDFSIGYSSHSAD
ECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCCCCC
SVELYLQESFTFQLLTTEASVALSAAKNEAPSAP
CEEEEEECCEEEEEEECCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8919789 [H]