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The map label for this gene is rbsC [H]

Identifier: 162146186

GI number: 162146186

Start: 369799

End: 370974

Strand: Reverse

Name: rbsC [H]

Synonym: GDI_0358

Alternate gene names: 162146186

Gene position: 370974-369799 (Counterclockwise)

Preceding gene: 162146187

Following gene: 162146185

Centisome position: 9.41

GC content: 68.11

Gene sequence:

>1176_bases
ATGTCTATCGAACCTTCAGGTGGGCCGCTGCTGGCGGCCCGGCCGGGCGCGGTCCTGCCCCCGGCACCCCGCGCACCGGA
CGGGGCCGGCACGCCGGACGAGCGGCTGCGCCATTCCTCGCTTCTGGTCCGGGCCATGCGCCGGCCCGAACTGGGCGCCA
TCGGCGGACTGGTGCTGGTGGGGATCTTCTTCGCCTTCACCGCCGACCGGTCGATGTTCTCGCTGAACGGCGGGCTGGCG
ATCATGAACCCCTCGGCGCAGCTCGGCATCATGGCGGTGGCCGTGGCGCTGCTGATGATCGGGGGCGAATTCGACCTGTC
CATCGGGTCCATGGTCGCGTTTTCCGGCCTGGCCTTCGGCATCTTCCTGCTGCAATGGCACCTGCCGCTGCTGCTTTCGA
TCCTGCTGACCCTGGTGGTCGCGGCGATCGTGGGCACCATCAACGGCCAGCTGGTGATCTGGACGCGGCTGCCGTCCTTT
ATCGTGACGCTGGCCTTCTTCTTCATCCTGCGCGGCCTGTCCCTGGTCGGGCTGAAGGCGGTCACGGGCGGCACCACCCA
GTTGCGCGGCTTTACCGAGGCCGCGTCGGACAGCATCTTCACGCCGCTCTTTTCCGGCTTCGCCTTCGGCGGCCCGTTCC
GGTGGGCGGCGCATCACGGCCTGATCGCGCTGCTGCCCGACGGCACGCCCGCCGCACCCGGCATCCCGATCGCGGTGATG
TGGTTCGTCGGCCTGACCGCGCTTTCGACCTGGTGCCTGTTGAAGACGAAGCTGGGCAACTGGATCTTCGCCAGCGGCGG
CGACCCCAGGGCGGCCCGCAATTCGGGCGTGCCGGTGGACCAGGTCAAGACCGGGCTGTTCATCCTGACCGCGTGCGCCG
CGGCGCTGGTCGGCATCCTGACGGTGCTGGATGCCGGGTCCACCGATGCGATGCGCGGCACGCAGAAGGAATTCCAGGCC
GTGATCGCCGCCGTGATCGGCGGGTGCCTGCTGACGGGGGGATACGGATCGACGCTGGGCGCCTTCTTCGGGGCGATCAT
CTTCGGCGTGGTGTCGATCGGGCTGAGCTACACCACGTTCGACAGCGACTGGTTCCAGGTCTTCCTCGGGGTGATGCTGC
TGATTGCGGTGATCTTCAATAACAACCTGCGCCGGAAGGTGACGGGGGAGCGTTGA

Upstream 100 bases:

>100_bases
TTGCGCCTTGACCTTGCGGGGACAAGAACGGAATGTGCGTTCCGTAGACATATAAAAATAGAAACGACGGTTCATCCTGC
GTTTCATGGAGAATAATCGA

Downstream 100 bases:

>100_bases
GCCATGAATTACATCACACCACGTGGGACATCCTCGGGGCATGGCGGTTCGGACGCGGTCGATCTGCCGCCGAAGGGCAC
GCCGATCATCGAAATCAAGT

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSIEPSGGPLLAARPGAVLPPAPRAPDGAGTPDERLRHSSLLVRAMRRPELGAIGGLVLVGIFFAFTADRSMFSLNGGLA
IMNPSAQLGIMAVAVALLMIGGEFDLSIGSMVAFSGLAFGIFLLQWHLPLLLSILLTLVVAAIVGTINGQLVIWTRLPSF
IVTLAFFFILRGLSLVGLKAVTGGTTQLRGFTEAASDSIFTPLFSGFAFGGPFRWAAHHGLIALLPDGTPAAPGIPIAVM
WFVGLTALSTWCLLKTKLGNWIFASGGDPRAARNSGVPVDQVKTGLFILTACAAALVGILTVLDAGSTDAMRGTQKEFQA
VIAAVIGGCLLTGGYGSTLGAFFGAIIFGVVSIGLSYTTFDSDWFQVFLGVMLLIAVIFNNNLRRKVTGER

Sequences:

>Translated_391_residues
MSIEPSGGPLLAARPGAVLPPAPRAPDGAGTPDERLRHSSLLVRAMRRPELGAIGGLVLVGIFFAFTADRSMFSLNGGLA
IMNPSAQLGIMAVAVALLMIGGEFDLSIGSMVAFSGLAFGIFLLQWHLPLLLSILLTLVVAAIVGTINGQLVIWTRLPSF
IVTLAFFFILRGLSLVGLKAVTGGTTQLRGFTEAASDSIFTPLFSGFAFGGPFRWAAHHGLIALLPDGTPAAPGIPIAVM
WFVGLTALSTWCLLKTKLGNWIFASGGDPRAARNSGVPVDQVKTGLFILTACAAALVGILTVLDAGSTDAMRGTQKEFQA
VIAAVIGGCLLTGGYGSTLGAFFGAIIFGVVSIGLSYTTFDSDWFQVFLGVMLLIAVIFNNNLRRKVTGER
>Mature_390_residues
SIEPSGGPLLAARPGAVLPPAPRAPDGAGTPDERLRHSSLLVRAMRRPELGAIGGLVLVGIFFAFTADRSMFSLNGGLAI
MNPSAQLGIMAVAVALLMIGGEFDLSIGSMVAFSGLAFGIFLLQWHLPLLLSILLTLVVAAIVGTINGQLVIWTRLPSFI
VTLAFFFILRGLSLVGLKAVTGGTTQLRGFTEAASDSIFTPLFSGFAFGGPFRWAAHHGLIALLPDGTPAAPGIPIAVMW
FVGLTALSTWCLLKTKLGNWIFASGGDPRAARNSGVPVDQVKTGLFILTACAAALVGILTVLDAGSTDAMRGTQKEFQAV
IAAVIGGCLLTGGYGSTLGAFFGAIIFGVVSIGLSYTTFDSDWFQVFLGVMLLIAVIFNNNLRRKVTGER

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=338, Percent_Identity=30.4733727810651, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1788896, Length=357, Percent_Identity=29.6918767507003, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1789992, Length=373, Percent_Identity=30.8310991957105, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI87082395, Length=304, Percent_Identity=27.6315789473684, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1790524, Length=274, Percent_Identity=28.8321167883212, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787793, Length=321, Percent_Identity=27.4143302180685, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787794, Length=306, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=27.0627062706271, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788471, Length=301, Percent_Identity=29.5681063122924, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 40839; Mature: 40708

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEPSGGPLLAARPGAVLPPAPRAPDGAGTPDERLRHSSLLVRAMRRPELGAIGGLVLV
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GIFFAFTADRSMFSLNGGLAIMNPSAQLGIMAVAVALLMIGGEFDLSIGSMVAFSGLAFG
HHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
IFLLQWHLPLLLSILLTLVVAAIVGTINGQLVIWTRLPSFIVTLAFFFILRGLSLVGLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
VTGGTTQLRGFTEAASDSIFTPLFSGFAFGGPFRWAAHHGLIALLPDGTPAAPGIPIAVM
CCCCCHHHCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCEEEEECCCCCCCCCCHHHHH
WFVGLTALSTWCLLKTKLGNWIFASGGDPRAARNSGVPVDQVKTGLFILTACAAALVGIL
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TVLDAGSTDAMRGTQKEFQAVIAAVIGGCLLTGGYGSTLGAFFGAIIFGVVSIGLSYTTF
HHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEC
DSDWFQVFLGVMLLIAVIFNNNLRRKVTGER
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIEPSGGPLLAARPGAVLPPAPRAPDGAGTPDERLRHSSLLVRAMRRPELGAIGGLVLV
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GIFFAFTADRSMFSLNGGLAIMNPSAQLGIMAVAVALLMIGGEFDLSIGSMVAFSGLAFG
HHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
IFLLQWHLPLLLSILLTLVVAAIVGTINGQLVIWTRLPSFIVTLAFFFILRGLSLVGLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
VTGGTTQLRGFTEAASDSIFTPLFSGFAFGGPFRWAAHHGLIALLPDGTPAAPGIPIAVM
CCCCCHHHCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCEEEEECCCCCCCCCCHHHHH
WFVGLTALSTWCLLKTKLGNWIFASGGDPRAARNSGVPVDQVKTGLFILTACAAALVGIL
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TVLDAGSTDAMRGTQKEFQAVIAAVIGGCLLTGGYGSTLGAFFGAIIFGVVSIGLSYTTF
HHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEC
DSDWFQVFLGVMLLIAVIFNNNLRRKVTGER
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]