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The map label for this gene is ycdC [C]

Identifier: 162146141

GI number: 162146141

Start: 323200

End: 323856

Strand: Reverse

Name: ycdC [C]

Synonym: GDI_0313

Alternate gene names: 162146141

Gene position: 323856-323200 (Counterclockwise)

Preceding gene: 162146144

Following gene: 162146138

Centisome position: 8.21

GC content: 66.36

Gene sequence:

>657_bases
GTGTCGTCTGCATCGCCTCAATCCGTCCTGTCCCGCCGAGAGCAGCGCCGCGTCGAAACGCGCGCCTCGCTCATCAACGC
GGCAATGTCCCTGCTTTCCACGAAAGGTTTTGAAGAAACCACGGTCGATGAAATCGCGCAGACCGCCGGAATCGCACGGC
GCACGCTGTTTCGCTATTTCCCGACCAAGGCCGACATCGTGACGGCATGGACGCAGCAGATGACGGACGTCCTGGCACGC
AGCGTCGCCGCATGCCCCGCCAGCCTTCCCCCGCAGGCCCTGCTCGGTCACGCGCTCGAATCCGTGGTTCCGCATATCGC
GCCCACCCCGCGTGAGGCCTACGCCTGCGTCTATCTGATCGAACGCACGCCGGCGCTGCTGTCGGTCAGCCTGCGTAAAT
ACGCGCAATGGGAAGACAGCCTCGCGGACGCACTGATGCAGCGACTGGCGCCGTCCGACGACCGGGCATTGTCCGCGCGC
GTCGCCGCGCGATCCGGCATCGCCGCATTCCGGACCGCGCTGGACGAATGGATCAGGCTGAAGGGGCGCAGCCGCCTGGT
TCCGATCCTGCGCCGGATCATGCGACTGCAGGCCGCGATGCTGGCCCCGGCCGATCTGGACTGGATCAGTCCAGACGAAC
TGACGGCCGCACCATAG

Upstream 100 bases:

>100_bases
AAGAAGGAACAAGGATCGGACGATCAATTCTTTACTGGCGGCAGGTGTGGGGATCGTCCTTCTGGACTATCCTGCCGAAA
TCCATTTGAGAAAGCCTGCC

Downstream 100 bases:

>100_bases
TGTCGATCCAGTCCGCGACACAGGACATCAGGCCGCGAAAGAAACCGTACAGTTCGACCTGATGCTGACGATAGAGCATC
AGATGGCCCACCCGTGCCGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Regulatory Protein; HTH-Type Transcriptional Regulator TcmR; Transcriptional Regulator Protein; Transcriptional Regulatory Protein; Transcription Regulator Protein; Transcriptional Repressor ButR

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSSASPQSVLSRREQRRVETRASLINAAMSLLSTKGFEETTVDEIAQTAGIARRTLFRYFPTKADIVTAWTQQMTDVLAR
SVAACPASLPPQALLGHALESVVPHIAPTPREAYACVYLIERTPALLSVSLRKYAQWEDSLADALMQRLAPSDDRALSAR
VAARSGIAAFRTALDEWIRLKGRSRLVPILRRIMRLQAAMLAPADLDWISPDELTAAP

Sequences:

>Translated_218_residues
MSSASPQSVLSRREQRRVETRASLINAAMSLLSTKGFEETTVDEIAQTAGIARRTLFRYFPTKADIVTAWTQQMTDVLAR
SVAACPASLPPQALLGHALESVVPHIAPTPREAYACVYLIERTPALLSVSLRKYAQWEDSLADALMQRLAPSDDRALSAR
VAARSGIAAFRTALDEWIRLKGRSRLVPILRRIMRLQAAMLAPADLDWISPDELTAAP
>Mature_217_residues
SSASPQSVLSRREQRRVETRASLINAAMSLLSTKGFEETTVDEIAQTAGIARRTLFRYFPTKADIVTAWTQQMTDVLARS
VAACPASLPPQALLGHALESVVPHIAPTPREAYACVYLIERTPALLSVSLRKYAQWEDSLADALMQRLAPSDDRALSARV
AARSGIAAFRTALDEWIRLKGRSRLVPILRRIMRLQAAMLAPADLDWISPDELTAAP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23981; Mature: 23850

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASPQSVLSRREQRRVETRASLINAAMSLLSTKGFEETTVDEIAQTAGIARRTLFRYF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
PTKADIVTAWTQQMTDVLARSVAACPASLPPQALLGHALESVVPHIAPTPREAYACVYLI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ERTPALLSVSLRKYAQWEDSLADALMQRLAPSDDRALSARVAARSGIAAFRTALDEWIRL
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KGRSRLVPILRRIMRLQAAMLAPADLDWISPDELTAAP
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSASPQSVLSRREQRRVETRASLINAAMSLLSTKGFEETTVDEIAQTAGIARRTLFRYF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
PTKADIVTAWTQQMTDVLARSVAACPASLPPQALLGHALESVVPHIAPTPREAYACVYLI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ERTPALLSVSLRKYAQWEDSLADALMQRLAPSDDRALSARVAARSGIAAFRTALDEWIRL
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KGRSRLVPILRRIMRLQAAMLAPADLDWISPDELTAAP
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA