BacMap

Definition	Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome.
Accession	NC_010125
Length	3,944,163

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The map label for this gene is ykvO [H]

Identifier: 162146092

GI number: 162146092

Start: 271708

End: 272448

Strand: Direct

Name: ykvO [H]

Synonym: GDI_0261

Alternate gene names: 162146092

Gene position: 271708-272448 (Clockwise)

Preceding gene: 162146091

Following gene: 162146093

Centisome position: 6.89

GC content: 66.94

Gene sequence:

>741_bases
ATGTCACGGAAACTCGAGGGCAAGATCGCCCTTGTCACCGGTGGCAGCGCCGGAATCGGCCTCGCCACGGCCCGGCTGTT
CGCCGGGGAGGGCGCGCATGTCTACATCACCGGACGCCGCCGGCCCGAGCTTGACGCCGCGGTCTCCGCCGCGGGCGGGG
GCATCAGCGCCATCCAGGCCGATGTCGCGAAACTCCCGGACCTCGACAGGGTTTATGACCAGATCGGCCGGGAGAAGGGC
CGCGTGGATATCGTCTTCGCCAACGCGGGCCTGGGCGAAATGGTCCCGCTCGGTGCGATTACCGAAGACCATTACGACAG
GATCTTCGACATCAACGTCAAGGGGGTCGTCTTCACGGTGCAGAAGGCGCTGCCCCTGATGCCGGACGGGGGCGCCATCG
TCCTGAATGCCTCCATCGCGTCCATCAAGGGCTTTCCCGCCTTCAGCATCTATGCCGCGACCAAGGCGGCCGTGCGGTCC
TTCGCCCGTTCCTGGACATCGGACCTCAAGGATCGCGGGATCAGGGTCAACGTGGTCAGCCCGGGGCCGATCGATACCCC
GCTGCTGAACCACACCTTCTCCGATCCCGACGAAAAGAAGGCCCTGGCCGCGACCGTCGTCATGGGACGCGTCGGCCGTG
CGGAGGAGGTCGCCAGCGCGGTGCTCTTCCTCGCCTCGTCCGACGCCAGCTTCGTCACCGGGGTGGAACTGTTCGTGGAC
GGAGGCGCCGCCCAGGTGTGA

Upstream 100 bases:

>100_bases
GCCATCGCCCCTCCCGCGTCCCTCGTGGCACGCCGGATGACCGGAGACACGATCCGTACCGATGGCGGTTTCCCGCAGGA
TATTGGAACGGAGACGCAGC

Downstream 100 bases:

>100_bases
GCGCGCATCCGGCGTGGGGGCGGGGATGTTCGCTTTGGAACGCACGGGGCGTGAAACCTGATCGCATCCTCACGGATATG
CGTTCGCCCGGGCGCGGAAT

Product: 3-oxoacyl-[acyl-carrier-protein] reductase

Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSRKLEGKIALVTGGSAGIGLATARLFAGEGAHVYITGRRRPELDAAVSAAGGGISAIQADVAKLPDLDRVYDQIGREKG
RVDIVFANAGLGEMVPLGAITEDHYDRIFDINVKGVVFTVQKALPLMPDGGAIVLNASIASIKGFPAFSIYAATKAAVRS
FARSWTSDLKDRGIRVNVVSPGPIDTPLLNHTFSDPDEKKALAATVVMGRVGRAEEVASAVLFLASSDASFVTGVELFVD
GGAAQV

Sequences:

>Translated_246_residues
MSRKLEGKIALVTGGSAGIGLATARLFAGEGAHVYITGRRRPELDAAVSAAGGGISAIQADVAKLPDLDRVYDQIGREKG
RVDIVFANAGLGEMVPLGAITEDHYDRIFDINVKGVVFTVQKALPLMPDGGAIVLNASIASIKGFPAFSIYAATKAAVRS
FARSWTSDLKDRGIRVNVVSPGPIDTPLLNHTFSDPDEKKALAATVVMGRVGRAEEVASAVLFLASSDASFVTGVELFVD
GGAAQV
>Mature_245_residues
SRKLEGKIALVTGGSAGIGLATARLFAGEGAHVYITGRRRPELDAAVSAAGGGISAIQADVAKLPDLDRVYDQIGREKGR
VDIVFANAGLGEMVPLGAITEDHYDRIFDINVKGVVFTVQKALPLMPDGGAIVLNASIASIKGFPAFSIYAATKAAVRSF
ARSWTSDLKDRGIRVNVVSPGPIDTPLLNHTFSDPDEKKALAATVVMGRVGRAEEVASAVLFLASSDASFVTGVELFVDG
GAAQV

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=33.2, Blast_Score=136, Evalue=1e-32,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=31.2252964426877, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=32.5102880658436, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=33.1932773109244, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=31.0204081632653, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=31.7073170731707, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=33.5106382978723, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=31.640625, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=32.620320855615, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19923817, Length=249, Percent_Identity=26.1044176706827, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI223718074, Length=201, Percent_Identity=29.8507462686567, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=31.1688311688312, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=29.6, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=28.6885245901639, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=28, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI209862901, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI19923983, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=27.34375, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=35.3658536585366, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=32.3886639676113, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=36.7768595041322, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.952380952381, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=33.469387755102, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=30.5785123966942, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=32.1285140562249, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789208, Length=242, Percent_Identity=29.3388429752066, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=33.6, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=26.8595041322314, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=29.0983606557377, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786701, Length=213, Percent_Identity=31.4553990610329, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787820, Length=224, Percent_Identity=30.3571428571429, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787526, Length=212, Percent_Identity=26.4150943396226, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=34.5724907063197, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=29.8039215686275, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=28.6852589641434, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=34.9809885931559, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=32.3308270676692, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=32.5396825396825, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=31.5985130111524, Blast_Score=106, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=32.5842696629214, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=33.0677290836653, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=32.6996197718631, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=31.4606741573034, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=32.6530612244898, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=34.2105263157895, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=32.319391634981, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=33.0798479087452, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=34.469696969697, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=238, Percent_Identity=32.3529411764706, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=31.9702602230483, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=31.6205533596838, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.1787072243346, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=31.9702602230483, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=31.0606060606061, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=273, Percent_Identity=32.967032967033, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=30.9701492537313, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=32.2834645669291, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=32.3076923076923, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=29.0076335877863, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=31.2252964426877, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=27.843137254902, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=28.2828282828283, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=27.0408163265306, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=204, Percent_Identity=27.9411764705882, Blast_Score=79, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=28.2868525896414, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=174, Percent_Identity=31.0344827586207, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=31.9796954314721, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=35.7723577235772, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=34.7107438016529, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=31.1740890688259, Blast_Score=127, Evalue=6e-30,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=34.5528455284553, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=34.8360655737705, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=35.2459016393443, Blast_Score=120, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=34.2857142857143, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=33.4677419354839, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=27.5, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281364494, Length=203, Percent_Identity=29.064039408867, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24663911, Length=237, Percent_Identity=26.5822784810127, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640492, Length=221, Percent_Identity=27.1493212669683, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=27.5, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28574402, Length=196, Percent_Identity=30.1020408163265, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584744, Length=196, Percent_Identity=30.1020408163265, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17737361, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=27.319587628866, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584748, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI161076933, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28571387, Length=242, Percent_Identity=25.2066115702479, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=25.4237288135593, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356301, Length=220, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007238, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100 [C]

Molecular weight: Translated: 25610; Mature: 25478

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKLEGKIALVTGGSAGIGLATARLFAGEGAHVYITGRRRPELDAAVSAAGGGISAIQA
CCCCCCCEEEEEECCCCCCHHHHHEEEECCCCEEEEECCCCCCHHHHHHCCCCCHHHHHH
DVAKLPDLDRVYDQIGREKGRVDIVFANAGLGEMVPLGAITEDHYDRIFDINVKGVVFTV
HHHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEE
QKALPLMPDGGAIVLNASIASIKGFPAFSIYAATKAAVRSFARSWTSDLKDRGIRVNVVS
EHHCCCCCCCCEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
PGPIDTPLLNHTFSDPDEKKALAATVVMGRVGRAEEVASAVLFLASSDASFVTGVELFVD
CCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCCEEEEEEEEE
GGAAQV
CCCCCC
>Mature Secondary Structure 
SRKLEGKIALVTGGSAGIGLATARLFAGEGAHVYITGRRRPELDAAVSAAGGGISAIQA
CCCCCCEEEEEECCCCCCHHHHHEEEECCCCEEEEECCCCCCHHHHHHCCCCCHHHHHH
DVAKLPDLDRVYDQIGREKGRVDIVFANAGLGEMVPLGAITEDHYDRIFDINVKGVVFTV
HHHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEE
QKALPLMPDGGAIVLNASIASIKGFPAFSIYAATKAAVRSFARSWTSDLKDRGIRVNVVS
EHHCCCCCCCCEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
PGPIDTPLLNHTFSDPDEKKALAATVVMGRVGRAEEVASAVLFLASSDASFVTGVELFVD
CCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEEEECCCCCCEEEEEEEEE
GGAAQV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NADPH [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]

Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]