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The map label for this gene is ykoU [H]

Identifier: 162146001

GI number: 162146001

Start: 177163

End: 179733

Strand: Direct

Name: ykoU [H]

Synonym: GDI_0169

Alternate gene names: 162146001

Gene position: 177163-179733 (Clockwise)

Preceding gene: 162146000

Following gene: 162146005

Centisome position: 4.49

GC content: 69.82

Gene sequence:

>2571_bases
ATGGCGCTGGACACCTATCGCAACAAGCGCGACTTCGAGGCGACGCCCGAACCCGAGGGTGCCGAGGCGGCGGAAAAGCC
GGATACCGGCGCGGGCCATCTGTTCGTCATCCAGAAACATGCGGCACGCCGCCTGCATTACGACCTGCGGCTGGAAATGG
ATGGCGTGCTGAAGAGCTGGGCGGTGACGCGCGGCCCCAGCCTGAACCCGGGCGACAAGCGCCTGGCCGTGCAGGTCGAG
GACCACCCGCTGGATTACGGCACGTTCGAGGGCACGATCCCGAAGGGGCAGTATGGCGGCGGCACGGTCATGCTCTGGGA
CAAGGGCACGTGGACGCCGCTGCACGATCCGGTCCGGGGCCTCGCCAAGGGGCATCTCGATTTCGAACTGCGGGGCGAAA
AGCTTCACGGACGCTGGAACCTGGTGCGGATGGACGGACACCGCGAGGGAACGCATGAGAACTGGCTGCTGATCAAGGCC
GCCGATTCCGATGCACGGTCGAAGAACGATGCCGATATCCTCGAAGAGCGGCCGGAATCCGTAAAGACCGGCCGTGCGAT
GGACGACATCGCGGCCGGTGCGCCAGGGAAGGACAAGGTCGGGAAGGCGGCGGCCCAAAAAGCCGTGACGAAGAAAGCCG
CGATACCGAAGGACGCGCCGCAGGCGGACGCGGCCGCGACAGGCGCCGCACCCTGCGCGGGGGCGAAGCCCGGCCCGTTG
CCATCCTTCGTCGAGCCCGAACTGGCCACGCTGGTGCGCGCGGCCCCCACCGGCCCGCAATGGCTGCACGAGGTCAAGTT
CGACGGCTACCGCCTGCTGGCGCGGATCGAAGCCGGACGGGTCGTGCTGCTGACCCGCACGGGCCTGGACTGGACCGCCC
GGTTCGGCGACCAGATCAGTGCCGCGCTGGCGTCCCTGCCGGTGCGGGCAGCGCTGATCGACGGCGAACTGGTGGTGGAA
ACCGCAGGCGGGACCTCGGATTTTTCCGCTCTCCAGGCCGATCTCAGCGCCGGCCGCACCGACCGCTTCATCTTCTACGT
CTTCGATCTGTTGCATCTGGACGGCTACGACCTGCGCGACGCGACGCTGGAGGCGCGCAAGGGCGCGCTGCACGACCTGG
TGCCGGACGATGCGGCGCGGCTGCGCTTCAGCGGCCATTTCGACGAGGCCGGGGGGCAGGTGCTGCGCCATGCCTGCCGC
CTGGGCCTGGAGGGAATCGTCTCCAAGCAGCGGGACGCGCCCTACCGGTCGGGACGGGGCCGGGACTGGGTGAAATCGAA
ATGCGTGGCGCGGCAGGAATTCGTGATCGGCGGCTATGTGCCCTCGACCGCCAACCGGGGGGCGGTCGGCTCGCTGGTCC
TCGGGGTCCAGGAAAACGGCAGGCTGGTCCATGTCGGCCGGGTCGGGACCGGCTTCACCGCCGCGACGGCGGCGGACCTG
TTCCGGCGCCTGCAACCGCTTGATGTCCCCGACAGTCCTTTCGCCGCTGCCCTGACGGCCCGCGAGCGAAAGGGGGTGCG
CTATGTCCGCCCCGATTGCGTGGCGGAAGTGGAATTCCGCGCCTGGACCGCCGACGGCCATCTGCGCCACGCGGCGTTCC
TGGGCCAGCGCGAGGACAAGCCGGCGGCCGACATCGTCCGCGAGGTCGAAGCGCCCGACCCCGTATCCTCCGGCCCTTCA
TCCAAACCGGTCAAACCGGTTTCCCCGGAACCCGCGCCTGCCCGCCCGGCCCGCACCCTGACCCATCCCGACCGGTCCTA
CTGGCCGGATGCCGGCGTGACCAAGCAGGACCTGGCCGATTATTACGCCGCGATCTGGCCGCGAATGGCGCCCTTCATCA
CCGACCGCGCGCTGGCGCTGCTGCGCTGCCCCAACGGCATCGCGGGGCCGCGCTTCTTCCAGAAGAATTTATGGAAGGGC
GCCGGCGGCCACCTGGTGCCGTTGCAGGACCCGGAGGGCGAGGCCGGCACGCCGCTGATCGGCCTGCACGACCGCGACGG
GCTGATCGACCTGGTGCAGGCCGCCGCGCTGGAAATCCATCCCTGGGGCGCGTCCGTCCAGGCGTGGTCCCAGCCCGACA
TGATCGTGATGGACCTCGATCCCGGCGACGGCGTGCCCTGGTCCATGGTGATCGAGGCGGCGCGGGAAATCCGCGCGCGG
CTGGAACGGTCCGGCCTCGCGTCCTTCGTCAAGACGACCGGCGGCAAGGGGCTGCATGTCGTGGCGCCGCTGAAACCCGG
GGCCGACTGGGCGGTGGTCAAGGCCTTCACCCGGTCCATGGCCCAGGCGATGGTGTCGGACAGTCCGCAGCGTTATGTCG
CCACCATCACCAAATCCAGGCGCCAGGGCCGTATCCTGGTCGATTACCTGCGCAACCAGCGCGGCGCGACGGCCGTCGCG
CCCTATTCCCCCCGCGCCCGTCCCGGCGCGCCGGTCGCGATGCCGCTGGCCTGGAACGAACTGGGGCCGGATATCGGACC
CGCGCACTTCACCATCGGGACGATCGGCGCCCGATTGGCGGTCGCGGACCCATGGGCGGAGATCCGTGACGCGGCCCGGC
CGCTCCGTTAA

Upstream 100 bases:

>100_bases
CCTGCGCGAAAGCGCGGGCCAGATGCCCCCTACCCCGGCCCACCGCCGGGGCACCGCGCGCGGCAGGGCGGCGGCACCGC
ATCGCAAGGCGGGTTGAGCC

Downstream 100 bases:

>100_bases
GGGCCGCTCCGTCAGGAGGTTCCATCCTGCGCCAGGCTGGCCCGCAACGCATCCAGGATACTGACCACATTGCCGGTCTT
CGGTTTCGCGGCCTCGCGGG

Product: DNA ligase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 856; Mature: 855

Protein sequence:

>856_residues
MALDTYRNKRDFEATPEPEGAEAAEKPDTGAGHLFVIQKHAARRLHYDLRLEMDGVLKSWAVTRGPSLNPGDKRLAVQVE
DHPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRGLAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKA
ADSDARSKNDADILEERPESVKTGRAMDDIAAGAPGKDKVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPL
PSFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQISAALASLPVRAALIDGELVVE
TAGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRDATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACR
LGLEGIVSKQRDAPYRSGRGRDWVKSKCVARQEFVIGGYVPSTANRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADL
FRRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGQREDKPAADIVREVEAPDPVSSGPS
SKPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLADYYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKG
AGGHLVPLQDPEGEAGTPLIGLHDRDGLIDLVQAAALEIHPWGASVQAWSQPDMIVMDLDPGDGVPWSMVIEAAREIRAR
LERSGLASFVKTTGGKGLHVVAPLKPGADWAVVKAFTRSMAQAMVSDSPQRYVATITKSRRQGRILVDYLRNQRGATAVA
PYSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIGARLAVADPWAEIRDAARPLR

Sequences:

>Translated_856_residues
MALDTYRNKRDFEATPEPEGAEAAEKPDTGAGHLFVIQKHAARRLHYDLRLEMDGVLKSWAVTRGPSLNPGDKRLAVQVE
DHPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRGLAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKA
ADSDARSKNDADILEERPESVKTGRAMDDIAAGAPGKDKVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPL
PSFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQISAALASLPVRAALIDGELVVE
TAGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRDATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACR
LGLEGIVSKQRDAPYRSGRGRDWVKSKCVARQEFVIGGYVPSTANRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADL
FRRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGQREDKPAADIVREVEAPDPVSSGPS
SKPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLADYYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKG
AGGHLVPLQDPEGEAGTPLIGLHDRDGLIDLVQAAALEIHPWGASVQAWSQPDMIVMDLDPGDGVPWSMVIEAAREIRAR
LERSGLASFVKTTGGKGLHVVAPLKPGADWAVVKAFTRSMAQAMVSDSPQRYVATITKSRRQGRILVDYLRNQRGATAVA
PYSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIGARLAVADPWAEIRDAARPLR
>Mature_855_residues
ALDTYRNKRDFEATPEPEGAEAAEKPDTGAGHLFVIQKHAARRLHYDLRLEMDGVLKSWAVTRGPSLNPGDKRLAVQVED
HPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRGLAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKAA
DSDARSKNDADILEERPESVKTGRAMDDIAAGAPGKDKVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPLP
SFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQISAALASLPVRAALIDGELVVET
AGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRDATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACRL
GLEGIVSKQRDAPYRSGRGRDWVKSKCVARQEFVIGGYVPSTANRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADLF
RRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGQREDKPAADIVREVEAPDPVSSGPSS
KPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLADYYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKGA
GGHLVPLQDPEGEAGTPLIGLHDRDGLIDLVQAAALEIHPWGASVQAWSQPDMIVMDLDPGDGVPWSMVIEAAREIRARL
ERSGLASFVKTTGGKGLHVVAPLKPGADWAVVKAFTRSMAQAMVSDSPQRYVATITKSRRQGRILVDYLRNQRGATAVAP
YSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIGARLAVADPWAEIRDAARPLR

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 92557; Mature: 92426

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDTYRNKRDFEATPEPEGAEAAEKPDTGAGHLFVIQKHAARRLHYDLRLEMDGVLKSW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHCCEEEEEEHHHHHHHH
AVTRGPSLNPGDKRLAVQVEDHPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRG
HHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
LAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKAADSDARSKNDADILEERPES
HHCCCCCEEECCCEECCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCHH
VKTGRAMDDIAAGAPGKDKVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPL
HHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQIS
CCCCCHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHH
AALASLPVRAALIDGELVVETAGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRD
HHHHHCCEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
ATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACRLGLEGIVSKQRDAPYRSGRG
HHHHHHCCCHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCC
RDWVKSKCVARQEFVIGGYVPSTANRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADL
CHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHH
FRRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGQREDK
HHHCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCCCHHHHHHCCCCCC
PAADIVREVEAPDPVSSGPSSKPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLAD
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
YYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKGAGGHLVPLQDPEGEAGTPLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCEE
GLHDRDGLIDLVQAAALEIHPWGASVQAWSQPDMIVMDLDPGDGVPWSMVIEAAREIRAR
EECCCCCHHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
LERSGLASFVKTTGGKGLHVVAPLKPGADWAVVKAFTRSMAQAMVSDSPQRYVATITKSR
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQGRILVDYLRNQRGATAVAPYSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIGARLA
CCCCEEHHHHHCCCCCEEECCCCCCCCCCCCEEEEEEHHHHCCCCCCCEEEEEHHCCEEE
VADPWAEIRDAARPLR
ECCCHHHHHHHHCCCC
>Mature Secondary Structure 
ALDTYRNKRDFEATPEPEGAEAAEKPDTGAGHLFVIQKHAARRLHYDLRLEMDGVLKSW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHCCEEEEEEHHHHHHHH
AVTRGPSLNPGDKRLAVQVEDHPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRG
HHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
LAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKAADSDARSKNDADILEERPES
HHCCCCCEEECCCEECCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCHH
VKTGRAMDDIAAGAPGKDKVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPL
HHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQIS
CCCCCHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHH
AALASLPVRAALIDGELVVETAGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRD
HHHHHCCEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
ATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACRLGLEGIVSKQRDAPYRSGRG
HHHHHHCCCHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCC
RDWVKSKCVARQEFVIGGYVPSTANRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADL
CHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHH
FRRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGQREDK
HHHCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCCCHHHHHHCCCCCC
PAADIVREVEAPDPVSSGPSSKPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLAD
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
YYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKGAGGHLVPLQDPEGEAGTPLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCEE
GLHDRDGLIDLVQAAALEIHPWGASVQAWSQPDMIVMDLDPGDGVPWSMVIEAAREIRAR
EECCCCCHHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
LERSGLASFVKTTGGKGLHVVAPLKPGADWAVVKAFTRSMAQAMVSDSPQRYVATITKSR
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQGRILVDYLRNQRGATAVAPYSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIGARLA
CCCCEEHHHHHCCCCCEEECCCCCCCCCCCCEEEEEEHHHHCCCCCCCEEEEEHHCCEEE
VADPWAEIRDAARPLR
ECCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]