Click here to switch to the map view.

The map label for this gene is trbB [H]

Identifier: 162145964

GI number: 162145964

Start: 139301

End: 140305

Strand: Direct

Name: trbB [H]

Synonym: GDI_0130

Alternate gene names: 162145964

Gene position: 139301-140305 (Clockwise)

Preceding gene: 162145963

Following gene: 162145965

Centisome position: 3.53

GC content: 61.89

Gene sequence:

>1005_bases
ATGGCGGTCACATCGATTGAAAGTGGTGTCCGACAGCGTGGCATGTCCATGCTGCGCACGGCGATGGGACCGGCTATTGC
CCGGCACCTCGCTGATCCTGCCATTGTCGAGGTGATGCTCAATCCCGATGGCAGGCTGTGGATCGACCGCCTGTCCGAGG
GACTGGGTGATACGGGAGATCTGGTCACACCCGCTGACGCGGAGCGTATCATCCGCCTGGTCGCGCATCATGTCGGGGCC
GAGGTGCATGAGAGTGTGCCCCGTGTGTCGGCGGAATTGCCGACGGGCGAGCGTTTCGAGGGATTGCTGCCGCCGATTGT
GATGGCACCCAGCTTTGCGATCCGCAAGCCTGCCGTCGCGGTGTTCACCCTCGACGATTATGTCGCTGCCGGGATCATGA
CGGAGGGGCAGGCGGCATATCTTCGCCAGGCAGTCGCGGACCGTAAAAATATTCTGGTCGCGGGAGGCACATCCACTGGC
AAGACCACATTGGTCAACGCATTGCTGGCCGAGGTCGCGAAAACTGACGATCGCATCGTGCTGATCGAGGACACGCGCGA
ACTGCAATGCCGCGCGCCAAATCTTGTGTCGCTGCGCACCCGTGATGGTGTCGTCACGTTATCCGAACTGGTCCGTTCAG
CCCTGCGGCTGCGCCCTGACCGTATTCCCATTGGTGAGGTGCGCGGCCCCGAGGCGCTAGACCTGCTCAAAGCCTGGGGC
ACGGGTCATCCCGGTGGGATTGGCACGCTTCACGCCGGCACCGCCATCGGTGCCCTGCATCGCATGGAGCAACTGATTCA
GGAAATCGTCGTCACCGTACCGCGCGCCCTGATCGCCGAAACCATCGACGTGATCGCAGTCCTATCCGGACGCGGCACGG
CGCGCCGCCTATCCGAACTGGCTGAAGGCGATGGCCTCGATCCCGTGACGGGAGCCTATCGCATCAGGCCAGTCAGCCTT
TCATCTTCCAAAACATCATTCTCTGACAATGGAGAGTCGTTATGA

Upstream 100 bases:

>100_bases
TGGCTGGAAAATATTGTTGAAATCGGGAGAAAGCAGCACTCTCTAATTGTCCCCGTCGTCGTCCGGAGAGGCCGGATGAC
CCGTAAAGACGGGGATTCCC

Downstream 100 bases:

>100_bases
GTCCGCTGTCACGTCTGCGCGCCATCGTGTGCGCTGTTGCACGTCCCGATCATCGCATGACGGATCTTCGTGTGTTCGGA
ACGTCCACGCTCCTGTCGCT

Product: type IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MAVTSIESGVRQRGMSMLRTAMGPAIARHLADPAIVEVMLNPDGRLWIDRLSEGLGDTGDLVTPADAERIIRLVAHHVGA
EVHESVPRVSAELPTGERFEGLLPPIVMAPSFAIRKPAVAVFTLDDYVAAGIMTEGQAAYLRQAVADRKNILVAGGTSTG
KTTLVNALLAEVAKTDDRIVLIEDTRELQCRAPNLVSLRTRDGVVTLSELVRSALRLRPDRIPIGEVRGPEALDLLKAWG
TGHPGGIGTLHAGTAIGALHRMEQLIQEIVVTVPRALIAETIDVIAVLSGRGTARRLSELAEGDGLDPVTGAYRIRPVSL
SSSKTSFSDNGESL

Sequences:

>Translated_334_residues
MAVTSIESGVRQRGMSMLRTAMGPAIARHLADPAIVEVMLNPDGRLWIDRLSEGLGDTGDLVTPADAERIIRLVAHHVGA
EVHESVPRVSAELPTGERFEGLLPPIVMAPSFAIRKPAVAVFTLDDYVAAGIMTEGQAAYLRQAVADRKNILVAGGTSTG
KTTLVNALLAEVAKTDDRIVLIEDTRELQCRAPNLVSLRTRDGVVTLSELVRSALRLRPDRIPIGEVRGPEALDLLKAWG
TGHPGGIGTLHAGTAIGALHRMEQLIQEIVVTVPRALIAETIDVIAVLSGRGTARRLSELAEGDGLDPVTGAYRIRPVSL
SSSKTSFSDNGESL
>Mature_333_residues
AVTSIESGVRQRGMSMLRTAMGPAIARHLADPAIVEVMLNPDGRLWIDRLSEGLGDTGDLVTPADAERIIRLVAHHVGAE
VHESVPRVSAELPTGERFEGLLPPIVMAPSFAIRKPAVAVFTLDDYVAAGIMTEGQAAYLRQAVADRKNILVAGGTSTGK
TTLVNALLAEVAKTDDRIVLIEDTRELQCRAPNLVSLRTRDGVVTLSELVRSALRLRPDRIPIGEVRGPEALDLLKAWGT
GHPGGIGTLHAGTAIGALHRMEQLIQEIVVTVPRALIAETIDVIAVLSGRGTARRLSELAEGDGLDPVTGAYRIRPVSLS
SSKTSFSDNGESL

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35550; Mature: 35419

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTSIESGVRQRGMSMLRTAMGPAIARHLADPAIVEVMLNPDGRLWIDRLSEGLGDTGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCC
LVTPADAERIIRLVAHHVGAEVHESVPRVSAELPTGERFEGLLPPIVMAPSFAIRKPAVA
CCCCCCHHHHHHHHHHHHCHHHHHHCCHHCCCCCCCCCCCCCCCHHHHCCCCHHCCCCEE
VFTLDDYVAAGIMTEGQAAYLRQAVADRKNILVAGGTSTGKTTLVNALLAEVAKTDDRIV
EEEEHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
LIEDTRELQCRAPNLVSLRTRDGVVTLSELVRSALRLRPDRIPIGEVRGPEALDLLKAWG
EEECCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
TGHPGGIGTLHAGTAIGALHRMEQLIQEIVVTVPRALIAETIDVIAVLSGRGTARRLSEL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AEGDGLDPVTGAYRIRPVSLSSSKTSFSDNGESL
HCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVTSIESGVRQRGMSMLRTAMGPAIARHLADPAIVEVMLNPDGRLWIDRLSEGLGDTGD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCC
LVTPADAERIIRLVAHHVGAEVHESVPRVSAELPTGERFEGLLPPIVMAPSFAIRKPAVA
CCCCCCHHHHHHHHHHHHCHHHHHHCCHHCCCCCCCCCCCCCCCHHHHCCCCHHCCCCEE
VFTLDDYVAAGIMTEGQAAYLRQAVADRKNILVAGGTSTGKTTLVNALLAEVAKTDDRIV
EEEEHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
LIEDTRELQCRAPNLVSLRTRDGVVTLSELVRSALRLRPDRIPIGEVRGPEALDLLKAWG
EEECCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
TGHPGGIGTLHAGTAIGALHRMEQLIQEIVVTVPRALIAETIDVIAVLSGRGTARRLSEL
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AEGDGLDPVTGAYRIRPVSLSSSKTSFSDNGESL
HCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]