Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 162145905

GI number: 162145905

Start: 73931

End: 74317

Strand: Reverse

Name: ycfF [C]

Synonym: GDI_0067

Alternate gene names: 162145905

Gene position: 74317-73931 (Counterclockwise)

Preceding gene: 162145906

Following gene: 162145904

Centisome position: 1.88

GC content: 66.15

Gene sequence:

>387_bases
ATGTCCATGGCCGTTTCCGGACTGGGTCCGTACGATCCGCAGAACGTCTTCGCCAAGATCCTGCGTGGGGAAATCCCGTG
CCGCAAGATCTATGAAAACGAACACGCCCTGGCCTTCCACGATATCGCGCCCAAGGCGCCGGTGCATGCGCTGATCATCC
CCAAGGGCCCTTACGTCTCCTTCGCGGATTTCAGCAGCCAGGCCAGCGACGCCGAAATCGGCGGCTTCACCCGCGCGGTG
GGCCATGTGGCGGCGCAACTGGGGCTGGAGGATGCGGGCTACCGCCTGCTGTCGAACATGGGCGCGGCCGCCGGCCAGGA
AGTGCCGCATTTCCACGTCCACCTGTTCGGCGGCGCCGCGCTGGGGCCGATGCTGCAGCACGGCTGA

Upstream 100 bases:

>100_bases
TGTGGGCCGAACTGCACCGCCGCGAGGGCACCAGCGGCATCGCCGAAAAGGCCGCCCGCCCCCACGACCCGCTGGCGGAA
TAACACACTACCGAGGAGAG

Downstream 100 bases:

>100_bases
CGGGCGACACCGGCGGGAGGCCCGCTCGTCATGGATATCTTCGCTCATTCGCTCCCTGACGACCCCTCGACAGAACGATG
GGAAACGTTGCGCGCGCATT

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSMAVSGLGPYDPQNVFAKILRGEIPCRKIYENEHALAFHDIAPKAPVHALIIPKGPYVSFADFSSQASDAEIGGFTRAV
GHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAALGPMLQHG

Sequences:

>Translated_128_residues
MSMAVSGLGPYDPQNVFAKILRGEIPCRKIYENEHALAFHDIAPKAPVHALIIPKGPYVSFADFSSQASDAEIGGFTRAV
GHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAALGPMLQHG
>Mature_127_residues
SMAVSGLGPYDPQNVFAKILRGEIPCRKIYENEHALAFHDIAPKAPVHALIIPKGPYVSFADFSSQASDAEIGGFTRAVG
HVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAALGPMLQHG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=108, Percent_Identity=39.8148148148148, Blast_Score=86, Evalue=7e-18,
Organism=Homo sapiens, GI14211923, Length=108, Percent_Identity=37.962962962963, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787346, Length=114, Percent_Identity=42.1052631578947, Blast_Score=90, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17506713, Length=107, Percent_Identity=41.1214953271028, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=43.5185185185185, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=43.5185185185185, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13518; Mature: 13386

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMAVSGLGPYDPQNVFAKILRGEIPCRKIYENEHALAFHDIAPKAPVHALIIPKGPYVS
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCEE
FADFSSQASDAEIGGFTRAVGHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAA
ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCH
LGPMLQHG
HHHHHCCC
>Mature Secondary Structure 
SMAVSGLGPYDPQNVFAKILRGEIPCRKIYENEHALAFHDIAPKAPVHALIIPKGPYVS
CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCEE
FADFSSQASDAEIGGFTRAVGHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAA
ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCH
LGPMLQHG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664449; 1472710 [H]