| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yejL [C]
Identifier: 162139899
GI number: 162139899
Start: 1896852
End: 1897070
Strand: Reverse
Name: yejL [C]
Synonym: Sama_1556
Alternate gene names: 162139899
Gene position: 1897070-1896852 (Counterclockwise)
Preceding gene: 119774695
Following gene: 119774692
Centisome position: 44.05
GC content: 53.88
Gene sequence:
>219_bases ATGGCTATTCAATCTAAATACACCAATACCCAAGTGGAAACCCTGATTGCAGAAGTACTGGCCGTGCTGGAAAAACATCA GGCACCTACCGACCTTGGCCTGATGGTACTGGGCAACTGCGTCAGCCACCTGCTGGAAACCAAGGTGCCTGTTGCCAGCC GCGCCGCTGTGGCCGAGCAGTTTGCCAAGGCACTGAATCAGTCAGTGTCAAAAGCCTGA
Upstream 100 bases:
>100_bases GCCTGTTCTACTTTAATCGTCATACGCCTTGATAGTGATAGCCGTGGAAATCCGGTATTATATGCCGCTAACCCAATCCT TTGTGAAACATTTTTTGACT
Downstream 100 bases:
>100_bases TAAAGCTGGCACCCACACGGGAAAAGTGCTTAAGATACCAAGGTGTTAACCTGTCCCAAGTATAAGAGCGAACGGAATGG TTGAGAGGAAACAACAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 72; Mature: 71
Protein sequence:
>72_residues MAIQSKYTNTQVETLIAEVLAVLEKHQAPTDLGLMVLGNCVSHLLETKVPVASRAAVAEQFAKALNQSVSKA
Sequences:
>Translated_72_residues MAIQSKYTNTQVETLIAEVLAVLEKHQAPTDLGLMVLGNCVSHLLETKVPVASRAAVAEQFAKALNQSVSKA >Mature_71_residues AIQSKYTNTQVETLIAEVLAVLEKHQAPTDLGLMVLGNCVSHLLETKVPVASRAAVAEQFAKALNQSVSKA
Specific function: Unknown
COG id: COG3082
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0352 family [H]
Homologues:
Organism=Escherichia coli, GI1788514, Length=67, Percent_Identity=55.2238805970149, Blast_Score=81, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009857 - InterPro: IPR023202 - ProDom: PD027794 [H]
Pfam domain/function: PF07208 DUF1414 [H]
EC number: NA
Molecular weight: Translated: 7677; Mature: 7546
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIQSKYTNTQVETLIAEVLAVLEKHQAPTDLGLMVLGNCVSHLLETKVPVASRAAVAEQ CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH FAKALNQSVSKA HHHHHHHHHCCC >Mature Secondary Structure AIQSKYTNTQVETLIAEVLAVLEKHQAPTDLGLMVLGNCVSHLLETKVPVASRAAVAEQ CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH FAKALNQSVSKA HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]