| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yjiI [H]
Identifier: 161984785
GI number: 161984785
Start: 4434874
End: 4435272
Strand: Direct
Name: yjiI [H]
Synonym: SBO_4382
Alternate gene names: 161984785
Gene position: 4434874-4435272 (Clockwise)
Preceding gene: 82546673
Following gene: 82546685
Centisome position: 98.12
GC content: 50.13
Gene sequence:
>399_bases ATGGCAAAGCACAACGAAAAAGAGCTGGCGGATACGAGCAAGTTTTTAAGTTTTGTCCTCCGACACAAACCGGAGGCGAT TGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGATTAA CCCGTGCATTGCTGGATACCGTGGTCGCAACCAGCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTGCATCCGC GCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTAC GGCAAGCCGTTTCCTTGACGAGATAAAAAAAACAGGGGCTGATTGCAGGGGATCGTCATTACGTGCATCTCTCTGCTGA
Upstream 100 bases:
>100_bases GTGGAAAAGGTTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCCAGTGACAATGACATTGGTAAATAAAAACAGAA AATCCAGGGACGAAAACGAG
Downstream 100 bases:
>100_bases TGAAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTGTCTTAACCGTCAAAGCACAGGAAATGGCGAAAC GAGGCATTCCTTTCTGGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 131
Protein sequence:
>132_residues MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIR AVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGADCRGSSLRASLC
Sequences:
>Translated_132_residues MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIR AVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGADCRGSSLRASLC >Mature_131_residues AKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIRA VQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGADCRGSSLRASLC
Specific function: Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP- ribosy
COG id: COG1859
COG function: function code J; RNA:NAD 2'-phosphotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the kptA/TPT1 family [H]
Homologues:
Organism=Escherichia coli, GI87082424, Length=119, Percent_Identity=98.3193277310924, Blast_Score=243, Evalue=4e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022928 - InterPro: IPR002745 [H]
Pfam domain/function: PF01885 PTS_2-RNA [H]
EC number: 2.7.-.- [C]
Molecular weight: Translated: 14585; Mature: 14454
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGA HHHCCCCCCCCCCCCCCEEEEECCCCCCHHEEEECCCCCHHHHHHCHHHHHHHHHHHCCC DCRGSSLRASLC CCCCCCCCCCCC >Mature Secondary Structure AKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKTGA HHHCCCCCCCCCCCCCCEEEEECCCCCCHHEEEECCCCCHHHHHHCHHHHHHHHHHHCCC DCRGSSLRASLC CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA