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The map label for this gene is yebC [C]

Identifier: 161899028

GI number: 161899028

Start: 1994121

End: 1994861

Strand: Reverse

Name: yebC [C]

Synonym: TM1040_1893

Alternate gene names: 161899028

Gene position: 1994861-1994121 (Counterclockwise)

Preceding gene: 99081735

Following gene: 99081731

Centisome position: 62.32

GC content: 59.38

Gene sequence:

>741_bases
ATGGCAGGCCATTCCAAATGGGCAAACATCCAGCACCGTAAAGGTCGCCAGGATGCTGCGCGGTCCAAGCTCTTCTCCAA
ACTTTCCAAAGAAATCACCGTCGCCGCCAAAATGGGCGACCCGGACCCTGAAAAGAACCCGCGCCTGCGCCTTGCTGTGA
AGGAAGCCAAGTCGAACTCCGTGCCCAAGGACGTGATCGACCGCGCCATCAAGAAGGCGACCGGGGGCGATGCGGAGAAC
TACGACGAGATCCGCTACGAGGGTTACGGCCCCAATGGTGTCGCAGTGATCGTCGAGACCATGACCGACAACAAGAACCG
CACCGCCTCCACCGTGCGCTCGACCTTCTCCAAGAACGGCGGCAACCTCGGTGAAACCGGCTCTGTCGGCTTCATGTTCG
AACGCAAGGGCGAAGTGACCTATCCAGCCTCTGTGGGCGATGCGGACACGGTGATGATGGCCGCAATCGAAGCGGGCGCC
GAGGATGTGGAAAGTTCTGAAGACGGGCATGTGATTTTCTGCGCGGATACCGACCTCAACGAGGTGTCCAACGCGCTTGA
GGCGGAGCTTGGCGAATCCGAGAGCACCAAGCTGATCTGGAAGCCCACCACCACCACCGAGCTTGATCTCGAAGGCATGC
AAAAGCTGATGAAACTGGTGGATGCGCTGGAAGACGACGATGATGTGCAGCGCGTGACCACCAACTTTGAGGCCTCCGAC
GAGGTGATGGCCCAGCTCTGA

Upstream 100 bases:

>100_bases
ATCGGGATGCGCGCAGAAGAAAAACAGCCCGCGCTTGAAAGCCTGCGCTCTCAGAGGCTATATGAGCGCCAGTTTCTGAA
ATCAAAACACAGGATGCACC

Downstream 100 bases:

>100_bases
TCTTGGGATCAGGCAGGCTTGTGATACCGGCCCCACGTTTTCAGGCGTGGGGCCGTTTTCTTTTCTGGGTGGCCTGTGCC
GGTCGGGGGCATCGCGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVIDRAIKKATGGDAEN
YDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGA
EDVESSEDGHVIFCADTDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTNFEASD
EVMAQL

Sequences:

>Translated_246_residues
MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVIDRAIKKATGGDAEN
YDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGA
EDVESSEDGHVIFCADTDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTNFEASD
EVMAQL
>Mature_245_residues
AGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNSVPKDVIDRAIKKATGGDAENY
DEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNGGNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGAE
DVESSEDGHVIFCADTDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTNFEASDE
VMAQL

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=31.0483870967742, Blast_Score=119, Evalue=3e-27,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=49.5967741935484, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1788294, Length=231, Percent_Identity=43.7229437229437, Blast_Score=184, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17556100, Length=242, Percent_Identity=26.4462809917355, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=34.469696969697, Blast_Score=133, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24583305, Length=248, Percent_Identity=29.4354838709677, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1893_SILST (Q1GFE0)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_613888.2
- ProteinModelPortal:   Q1GFE0
- SMR:   Q1GFE0
- STRING:   Q1GFE0
- GeneID:   4077390
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_1893
- NMPDR:   fig|292414.1.peg.172
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- PhylomeDB:   Q1GFE0
- ProtClustDB:   PRK00110
- BioCyc:   SSP292414:TM1040_1893-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26741; Mature: 26610

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNS
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCCC
VPKDVIDRAIKKATGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNG
CCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
GNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGAEDVESSEDGHVIFCADTDLN
CCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCHHHHCCCCCCCEEEEECCCHH
EVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTNFEASD
HHHHHHHHHCCCCCCCEEEECCCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCH
EVMAQL
HHHHCC
>Mature Secondary Structure 
AGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNS
CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCCC
VPKDVIDRAIKKATGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFSKNG
CCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
GNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGAEDVESSEDGHVIFCADTDLN
CCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCHHHHCCCCCCCEEEEECCCHH
EVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTNFEASD
HHHHHHHHHCCCCCCCEEEECCCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCH
EVMAQL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA