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The map label for this gene is 161870525

Identifier: 161870525

GI number: 161870525

Start: 1618914

End: 1619753

Strand: Reverse

Name: 161870525

Synonym: NMCC_1589

Alternate gene names: NA

Gene position: 1619753-1618914 (Counterclockwise)

Preceding gene: 161870526

Following gene: 161870516

Centisome position: 75.22

GC content: 55.48

Gene sequence:

>840_bases
ATGAAACAACTCCGCGACAACAAAGCCCAAGGCTCTGCACTGTTTACCCTTGTGAGCGGTATCGTTATTGTTATTGCAGT
CCTTTATTTCCTGATTAAGCTGGCGGGCAGCGGCTCGTTCGGCGATGTCGATGCCACTACGGAAGCAGCAACGCAGACCC
GTATCCAGCCTGTCGGACAATTGACGATGGGCGACGGCATCCCCGTCGGCGAACGCCAAGGCGAACAGATTTTCGGCAAA
ATCTGTATCCAATGCCACGCGGCGGACAGCAATGTGCCGAACGCTCCGAAACTGGAACACAACGGCGATTGGGCACCGCG
TATCGCGCAAGGCTTCGATACCTTGTTCCAACACGCGCTGAACGGCTTTAACGCCATGCCTGCCAAAGGCGGTGCGGCAG
ACCTGACCGATCAGGAACTCAAACGGGCGATTACTTACATGGCGAACAAAAGCGGCGGTTCTTTCCCGAATCCTGATGAG
GCTGCGCCTGCCGACAATGCCGCTTCAGGAACAGCTTCTGCTCCTGCCGATAGTGCAGCTCCGGCAGAAGCGAAGGCAGA
AGACAAGGGTGCGGCAGCCCCTGCGGTCGGCGTTGACGGTAAAAAAGTCTTCGAAGCAACCTGTCAGGTGTGCCACGGCG
GTTCGATTCCCGGTATTCCCGGCATAGGCAAAAAAGACGATTGGGCACCGCGTATCAAAAAAGGCAAAGAAACCTTGCAC
AAACACGCCCTTGAAGGCTTTAACGCGATGCCGGCCAAAGGCGGCAATGCCGGTTTGAGCGATGACGAAGTCAAAGCGGC
TGTTGACTATATGGCAAACCAATCCGGTGCAAAATTCTAA

Upstream 100 bases:

>100_bases
CGGAAACTGACACTCTTCCAACTGAGCTATGGGTGCGTAAAACGTAAGGTTAACGTAAATTCTGCAAATTGGCAAAGGTT
ATCTTGCGCCGGCAGGACAA

Downstream 100 bases:

>100_bases
ATTTAGATTAAAATTTCGGATTAAATAAAAACGGGGCAGGTATCTGCTCCGTTTTTTTATGGGAATTTATAGTGGATTAA
CAAAAATCAGGACAAGGCGA

Product: cytochrome c5

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVDATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGK
ICIQCHAADSNVPNAPKLEHNGDWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
AAPADNAASGTASAPADSAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPGIPGIGKKDDWAPRIKKGKETLH
KHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSGAKF

Sequences:

>Translated_279_residues
MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVDATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGK
ICIQCHAADSNVPNAPKLEHNGDWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
AAPADNAASGTASAPADSAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPGIPGIGKKDDWAPRIKKGKETLH
KHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSGAKF
>Mature_279_residues
MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVDATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGK
ICIQCHAADSNVPNAPKLEHNGDWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
AAPADNAASGTASAPADSAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPGIPGIGKKDDWAPRIKKGKETLH
KHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSGAKF

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 28756; Mature: 28756

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVDATTEAATQTRIQPVGQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
LTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNGDWAPRIAQGFDTLFQHAL
EECCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDEAAPADNAASGTASAPADSAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPGIPGIGKKDDWAPRIKKGKETLH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSGAKF
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVDATTEAATQTRIQPVGQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
LTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNGDWAPRIAQGFDTLFQHAL
EECCCCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDEAAPADNAASGTASAPADSAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPGIPGIGKKDDWAPRIKKGKETLH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSGAKF
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]