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The map label for this gene is opr [H]

Identifier: 161870480

GI number: 161870480

Start: 1564698

End: 1565480

Strand: Direct

Name: opr [H]

Synonym: NMCC_1536

Alternate gene names: 161870480

Gene position: 1564698-1565480 (Clockwise)

Preceding gene: 161870479

Following gene: 161870485

Centisome position: 72.66

GC content: 50.96

Gene sequence:

>783_bases
ATGAATCCAGCCCCCAAAAAACCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCGCAGCGCA
GGCGGCAAGTGAAGACGGCAGCCGCAGCCCGTATTATGTGCAGGCGGATTTAGCCTACGCCGCCGAACGCATTACCCACA
ATTATCCGGAACCAACCGGTGCAGACAAAGACAAAATAAGCACAGTAAGCGATTATTTCAGAAACATCCGTGCGCATTCC
ATCCACCCCCGGGTGTCGGTCGGCTACGATTTCGGCGGCTGGAGGATAGCGGCAGATTATGCCAGTTACAGAAAATGGAA
AGAAAGTAATTCTTCTACTAATACAGAAAATAGCGAGACTCAACAGAACCGCATAAAGATTGAAACAGGACATCAGGGAA
ACGGCAGCTTCCACGCCGCTTCTTCTCTCGGCTTATCCGCCATTTACGATTTCAAACTCAACGATAAATTCAAACCCTAT
ATCGGCGCGCGCGTCGCCTACGGATACGTTAAGCATCAGGTTCATTCAGTGGAAAGCAAAACCAAGACTGTTACCCCTAA
ACCAAATGGAGGCCCTGTCAAAGAAGGTCCGACCCCCAAACCTGCCTATCACGAAAGCCACAGCATCAGCAGCGTGGGTC
TTGGTGTCATCGCCGGTGTCGGTTTCGACATCACGCCCAAGCTGACCTTGGACACCGGATACCGTTACCACAACTGGGGA
CGCTTGGAAAACACCCGCTTCAAAACCCACGAAGTCTCATTGGGCATGCGCTACCGCTTCTGA

Upstream 100 bases:

>100_bases
ATTGTGTTGAAACATCGCCACAAACCTGATATAGTCCGCTCCTACAACATCATTGAAAATCTTTCTTTTTTAATCAGTTA
AACCGAATACGGAGTCGAAA

Downstream 100 bases:

>100_bases
TTCCCCGATACCGATGCCGTCTGAACCTTCAGACGGCATGAGACCTTTGCCTGCGTACTTGGTGCGCTGGTCGCCTCCGA
ACATGGCGCGACACCCGACA

Product: opacity outermembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNPAPKKPSLLFSSLLFSSLLFSSAAQAASEDGSRSPYYVQADLAYAAERITHNYPEPTGADKDKISTVSDYFRNIRAHS
IHPRVSVGYDFGGWRIAADYASYRKWKESNSSTNTENSETQQNRIKIETGHQGNGSFHAASSLGLSAIYDFKLNDKFKPY
IGARVAYGYVKHQVHSVESKTKTVTPKPNGGPVKEGPTPKPAYHESHSISSVGLGVIAGVGFDITPKLTLDTGYRYHNWG
RLENTRFKTHEVSLGMRYRF

Sequences:

>Translated_260_residues
MNPAPKKPSLLFSSLLFSSLLFSSAAQAASEDGSRSPYYVQADLAYAAERITHNYPEPTGADKDKISTVSDYFRNIRAHS
IHPRVSVGYDFGGWRIAADYASYRKWKESNSSTNTENSETQQNRIKIETGHQGNGSFHAASSLGLSAIYDFKLNDKFKPY
IGARVAYGYVKHQVHSVESKTKTVTPKPNGGPVKEGPTPKPAYHESHSISSVGLGVIAGVGFDITPKLTLDTGYRYHNWG
RLENTRFKTHEVSLGMRYRF
>Mature_260_residues
MNPAPKKPSLLFSSLLFSSLLFSSAAQAASEDGSRSPYYVQADLAYAAERITHNYPEPTGADKDKISTVSDYFRNIRAHS
IHPRVSVGYDFGGWRIAADYASYRKWKESNSSTNTENSETQQNRIKIETGHQGNGSFHAASSLGLSAIYDFKLNDKFKPY
IGARVAYGYVKHQVHSVESKTKTVTPKPNGGPVKEGPTPKPAYHESHSISSVGLGVIAGVGFDITPKLTLDTGYRYHNWG
RLENTRFKTHEVSLGMRYRF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the opacity porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR016373
- InterPro:   IPR003394 [H]

Pfam domain/function: PF02462 Opacity [H]

EC number: NA

Molecular weight: Translated: 28845; Mature: 28845

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPAPKKPSLLFSSLLFSSLLFSSAAQAASEDGSRSPYYVQADLAYAAERITHNYPEPTG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCC
ADKDKISTVSDYFRNIRAHSIHPRVSVGYDFGGWRIAADYASYRKWKESNSSTNTENSET
CCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCC
QQNRIKIETGHQGNGSFHAASSLGLSAIYDFKLNDKFKPYIGARVAYGYVKHQVHSVESK
CCCEEEEEECCCCCCCEEHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
TKTVTPKPNGGPVKEGPTPKPAYHESHSISSVGLGVIAGVGFDITPKLTLDTGYRYHNWG
CEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEECCCC
RLENTRFKTHEVSLGMRYRF
CCCCCEEEEEEEEEEEEECC
>Mature Secondary Structure
MNPAPKKPSLLFSSLLFSSLLFSSAAQAASEDGSRSPYYVQADLAYAAERITHNYPEPTG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCC
ADKDKISTVSDYFRNIRAHSIHPRVSVGYDFGGWRIAADYASYRKWKESNSSTNTENSET
CCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCC
QQNRIKIETGHQGNGSFHAASSLGLSAIYDFKLNDKFKPYIGARVAYGYVKHQVHSVESK
CCCEEEEEECCCCCCCEEHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
TKTVTPKPNGGPVKEGPTPKPAYHESHSISSVGLGVIAGVGFDITPKLTLDTGYRYHNWG
CEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEECCCC
RLENTRFKTHEVSLGMRYRF
CCCCCEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2455211 [H]