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The map label for this gene is tdcF [C]

Identifier: 161869600

GI number: 161869600

Start: 631641

End: 632030

Strand: Reverse

Name: tdcF [C]

Synonym: NMCC_0616

Alternate gene names: 161869600

Gene position: 632030-631641 (Counterclockwise)

Preceding gene: 161869601

Following gene: 161869599

Centisome position: 29.35

GC content: 62.82

Gene sequence:

>390_bases
ATGTCCAAAACCATCATCCACACCGACAAAGCCCCCGCCGCCATCGGCGCGTACAGCCAAGCCGTCCGAGCCGGCGACAC
CGTTTACATGAGCGGTCAAATCCCCCTCGATCCCGCCACGATGACCGTCGTCGGCAACGGCGATTTCCGCGCCGAAGCGC
GCCAAGTGTTCCAAAACCTGCAAGCCGTCGCCGAAGCGGCAGGCGGCACGCTGGCCGACATCGTCAAACTCAACGCCTAC
CTGACCGACTTGGGCAATTTTGCCGTCTTCAACGAAGTCATGGCGGAATTTATCGCCGAGCCCTTCCCCGCCCGCGCCGC
CGTCGGCGTTGCCTCGCTGCCCAAAGGCGTGCAGGTCGAAGCCGAAGCCGTCCTCGTTTTGAACGCATAA

Upstream 100 bases:

>100_bases
CGGTTTTGTTTTCTGCCACCGCAACTACACAAGCCGACGGTTTTGTACGATAATCCCGAATGCTGCGGCTTCTGCCGCCC
TATTTTTTGAGGAATCCGAA

Downstream 100 bases:

>100_bases
TTCCACGTTCGGACTGCATGATATTTCAAAACCATGCCGTCCGAACCGCAACACTTTCCCACTTCACAACATCTGCAATG
GCACATTACGCAATCGGCGA

Product: ribonuclease, putative

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVVGNGDFRAEARQVFQNLQAVAEAAGGTLADIVKLNAY
LTDLGNFAVFNEVMAEFIAEPFPARAAVGVASLPKGVQVEAEAVLVLNA

Sequences:

>Translated_129_residues
MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVVGNGDFRAEARQVFQNLQAVAEAAGGTLADIVKLNAY
LTDLGNFAVFNEVMAEFIAEPFPARAAVGVASLPKGVQVEAEAVLVLNA
>Mature_128_residues
SKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVVGNGDFRAEARQVFQNLQAVAEAAGGTLADIVKLNAYL
TDLGNFAVFNEVMAEFIAEPFPARAAVGVASLPKGVQVEAEAVLVLNA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=42.741935483871, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082213, Length=130, Percent_Identity=43.0769230769231, Blast_Score=104, Evalue=2e-24,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=47.2868217054264, Blast_Score=103, Evalue=5e-24,
Organism=Escherichia coli, GI1787245, Length=108, Percent_Identity=31.4814814814815, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=130, Percent_Identity=43.8461538461538, Blast_Score=105, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=130, Percent_Identity=43.8461538461538, Blast_Score=105, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=130, Percent_Identity=43.8461538461538, Blast_Score=105, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=44.7154471544715, Blast_Score=101, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=39.8058252427184, Blast_Score=83, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=36.8852459016393, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13408; Mature: 13277

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVVGNGDFRAEARQVFQNL
CCCCEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH
QAVAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPFPARAAVGVASLPKGVQVE
HHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCCHHCCCCCCEEE
AEAVLVLNA
EEEEEEEEC
>Mature Secondary Structure 
SKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVVGNGDFRAEARQVFQNL
CCCEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH
QAVAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPFPARAAVGVASLPKGVQVE
HHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCCHHCCCCCCEEE
AEAVLVLNA
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]