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The map label for this gene is ygcF [C]

Identifier: 161869455

GI number: 161869455

Start: 485499

End: 486137

Strand: Direct

Name: ygcF [C]

Synonym: NMCC_0466

Alternate gene names: 161869455

Gene position: 485499-486137 (Clockwise)

Preceding gene: 161869454

Following gene: 161869457

Centisome position: 22.55

GC content: 54.62

Gene sequence:

>639_bases
ATGAAAAAAATCAATGTTGCCCCCGAAAATCCCCAATACCGCATCGTCGAAATCTTTGAAAGCCTGCAAGGCGAAGGCTG
GAACACGGGCATGCCCGCCGTTTTCGTCCGCTTGGGCAAATGCAACCTCGCCTGCGGCTGGTGTGATACCGATTATTTGA
CATTCGGCATGATGAGCCTGTCCGACATCTTAGGCTGTCTGAAAACCTATGCCGCCCGCAACATCATCATCACCGGCGGC
GAACCGACCATACAGCCGCATCTCGATATGCTGCTGGACACGCTCAAGGCGGAAGGCTATTTCCTCTGTCTCGAAACCAA
CGGACTCAATCCCGCGCCGCCGCAAATCGACTACGTCGCCACCAGCCCCAAAGCCTGCTATGCCGCCAAATATGAAAATA
GCTGTATCGAAACAGCCGACGAAGTGCGGATTGTTGCCGATGGTGATGTCCTTGCGTTCTGCGAAAACATGGAACGCAAA
ATCCGCGCACATCATTACTACCTTTCGCCCTGTGAGCAAGACGGTGCGATGAACATCTACGACACCATCCGCCAAATCGG
TATTCTGAACAGCCGCCCCGACGCGCCGGTGCATTGGCAGTTGAGCGTGCAGACGCACAAATGGGCGGGGATAGAGTAG

Upstream 100 bases:

>100_bases
TGATTGCCGCCGCGTGGGGCGCGTTCTCTTCCGGCAACAAAGGCATACTCGTCAAACAAGGTTTGCCCGCATTTTTGGCA
GCGGCGGCGGTGTTGGCGGT

Downstream 100 bases:

>100_bases
TTTAAGCAGTGTAACTCAAAGGGCCGGCTTACCGTTTTGCCGATGTTTGACATACGGGGAAAGTGTGCCGCTTCCGCGTG
AAACTGCCGGCATTTCCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACGWCDTDYLTFGMMSLSDILGCLKTYAARNIIITGG
EPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERK
IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE

Sequences:

>Translated_212_residues
MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACGWCDTDYLTFGMMSLSDILGCLKTYAARNIIITGG
EPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERK
IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE
>Mature_212_residues
MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACGWCDTDYLTFGMMSLSDILGCLKTYAARNIIITGG
EPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERK
IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=237, Percent_Identity=31.6455696202532, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23697; Mature: 23697

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACGWCDTDYLTFGMMSL
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHH
SDILGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVA
HHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEE
TSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSPCEQDGAMNIY
CCCCCEEEECCCCCHHCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCHH
DTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE
HHHHHHCCCCCCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLACGWCDTDYLTFGMMSL
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHH
SDILGCLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFLCLETNGLNPAPPQIDYVA
HHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEE
TSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERKIRAHHYYLSPCEQDGAMNIY
CCCCCEEEECCCCCHHCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCHH
DTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE
HHHHHHCCCCCCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]