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The map label for this gene is ypaA [H]

Identifier: 161869454

GI number: 161869454

Start: 484972

End: 485502

Strand: Direct

Name: ypaA [H]

Synonym: NMCC_0465

Alternate gene names: 161869454

Gene position: 484972-485502 (Clockwise)

Preceding gene: 161869453

Following gene: 161869455

Centisome position: 22.52

GC content: 52.17

Gene sequence:

>531_bases
TTGCAGCAATTCCAACTCTCTGGATTCCCGCCTGCGCGGAAAGGACGGTTTAGAGCGTCCTTATTTGAATTTACCGTAAA
ACGGTTTTTTCTCCTGTACGGATTCCCCGTTTTTTCAGACGACCTTCCATATCAAATACACCCATTAAAAGGAATACCCA
TGAAACTCCTCTTCATCCTCCTAGTCCTCTTCGTCGCCGTCGAACATTTCTACATCGCCTGGCTTGAAATGACGCAGATT
CCCAGCGAAAAAGCGGCGGAAATATTCAAGCTGCCTTATGAATTTATGGAACAAAAGCGCGTGCAGACCCTGTTCGGCAA
CCAAGGGCTGTATAACGGCTTTCTCGGCATCGGGCTGGTGTGGTCGCGGTTTGCCGCGCCGGATAACGCGGTGTACGGCG
CAATGGTACTGTTTCTCGGCTTCGTCCTGATTGCCGCCGCGTGGGGCGCGTTCTCTTCCGGCAACAAAGGCATACTCGTC
AAACAAGGTTTGCCCGCATTTTTGGCAGCGGCGGCGGTGTTGGCGGTATGA

Upstream 100 bases:

>100_bases
TGAACGTATCGATATAGTGAATTTGAATAAAACTTGCCCTAAGCCGTCATTCCCGCGCAGGCGGGAATCTAGACCTTGGT
TTTTCAGGAATATTTAAAAA

Downstream 100 bases:

>100_bases
AAAAAATCAATGTTGCCCCCGAAAATCCCCAATACCGCATCGTCGAAATCTTTGAAAGCCTGCAAGGCGAAGGCTGGAAC
ACGGGCATGCCCGCCGTTTT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQQFQLSGFPPARKGRFRASLFEFTVKRFFLLYGFPVFSDDLPYQIHPLKGIPMKLLFILLVLFVAVEHFYIAWLEMTQI
PSEKAAEIFKLPYEFMEQKRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGAMVLFLGFVLIAAAWGAFSSGNKGILV
KQGLPAFLAAAAVLAV

Sequences:

>Translated_176_residues
MQQFQLSGFPPARKGRFRASLFEFTVKRFFLLYGFPVFSDDLPYQIHPLKGIPMKLLFILLVLFVAVEHFYIAWLEMTQI
PSEKAAEIFKLPYEFMEQKRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGAMVLFLGFVLIAAAWGAFSSGNKGILV
KQGLPAFLAAAAVLAV
>Mature_176_residues
MQQFQLSGFPPARKGRFRASLFEFTVKRFFLLYGFPVFSDDLPYQIHPLKGIPMKLLFILLVLFVAVEHFYIAWLEMTQI
PSEKAAEIFKLPYEFMEQKRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGAMVLFLGFVLIAAAWGAFSSGNKGILV
KQGLPAFLAAAAVLAV

Specific function: Unknown

COG id: COG3759

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009732 [H]

Pfam domain/function: PF06993 DUF1304 [H]

EC number: NA

Molecular weight: Translated: 19711; Mature: 19711

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQFQLSGFPPARKGRFRASLFEFTVKRFFLLYGFPVFSDDLPYQIHPLKGIPMKLLFIL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHH
LVLFVAVEHFYIAWLEMTQIPSEKAAEIFKLPYEFMEQKRVQTLFGNQGLYNGFLGIGLV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WSRFAAPDNAVYGAMVLFLGFVLIAAAWGAFSSGNKGILVKQGLPAFLAAAAVLAV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MQQFQLSGFPPARKGRFRASLFEFTVKRFFLLYGFPVFSDDLPYQIHPLKGIPMKLLFIL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHH
LVLFVAVEHFYIAWLEMTQIPSEKAAEIFKLPYEFMEQKRVQTLFGNQGLYNGFLGIGLV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WSRFAAPDNAVYGAMVLFLGFVLIAAAWGAFSSGNKGILVKQGLPAFLAAAAVLAV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400208; 11337471 [H]