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The map label for this gene is rtcB [C]

Identifier: 161702960

GI number: 161702960

Start: 1879883

End: 1881031

Strand: Reverse

Name: rtcB [C]

Synonym: Bcep18194_A4862

Alternate gene names: 161702960

Gene position: 1881031-1879883 (Counterclockwise)

Preceding gene: 78066335

Following gene: 78066331

Centisome position: 50.92

GC content: 70.06

Gene sequence:

>1149_bases
ATGGGCAATTCCATGCAATACCTGGGCGAGCGCATCACGTTGTGCGCTTGCGCCACCACCTGGATCGAAGGTGAGGCCAT
CCGGCAGCTCGAACACGCTGCCACCCTCCCCGGCATGCGGCGCGTCGCCGGCATGCCCGATCTTCACCCCGGACGCGGCT
ACCCGGTTGGCGCCGCGTTCTTCTCGACGGGCCAGCTGTATCCGGCATTGATCGGCGGCGATATCGGCTGCGGGATGGCG
TTGTGGCAAACCGCGCTCGATGCGCGGCGCGTCAGCGCGTCGAAGCTCGCAAGCCGGCTCGGCTCGATCGATGCCACGCC
CGATGCGAGCTGGCAGCCGCTCATCGCGGCCGCCGGATTCGCGGATCACGCGTACGCGGCATCGCTCGGCACGATCGGCA
GCGGCAATCATTTCGCGGAAGCGCAGCGGATCGACGCGGTGTACGACACCGATGCCGTCGCGGCGCTCGGCCTCGATCCC
GATCGCCTGCTGCTGCTCGTGCATAGCGGGTCGCGCGGCTTCGGCCAGTCGATCCTGGAGCAGCACATGCGCGAGCACGG
CTACAACGGCCTCGACGATACGGATGCCGCCTGCACGGCGTACCTCGCGCGTCACGATGCGGCGCTGCGCTACGCGATTG
CGAATCGCGACCTGATCGCGCGGCGCATGCTGGCGCGCTGGCGCACCGATGGCCGGTGCGTGCTCGACGTGAACCACAAC
CTGGTGAGCCGCGCGACCGTCGACGGCGAGCCGGGCTGGCTGCATCGCAAAGGTGCGACGCCGGCCGACGCGGGGCCGGT
CGTCATTCCCGGGTCGCGCGGCGACTACAGCTACCTCGTCGCGCCGGTGCGGCCCGATGATGCGGCCAGCCTGGCGTCGC
TGGCGCACGGTGCGGGCCGCAAGTGGGCACGCGGCGATTGCAAGGGGCGCCTCGAACGGCGCTTCACGCCGTCGCAGCTC
ACGCGCACGCCGCTCGGCAGCCACGTGATCTGCGAAGACCGCGAACTGCTGTACGAGGAAGCGCCACAGGCCTACAAGCC
GATCGACAGCGTCGTCGACGCGCTCGAGGCGGCCGGCCTGCTGCGCAAGCTGGCTCGGCTCGCGCCGGTGCTGACCTACA
AGACGTCCGGGGAGGCTGGCCGATGCTGA

Upstream 100 bases:

>100_bases
TCGTGCCGCCCTCTTCCCGACTTCCGATGTCGGGCAGCGCATGGTTGCGCTGCCTGCGCCATGGCCCGCCGTTCACTTCT
TTCATCGAACGGAATCCTCC

Downstream 100 bases:

>100_bases
TGCAGATTTCTTCGGCGCACGGCCCGCTCGAATGCCAGCTGGCCGCGGCCAATGCGTTGCGGCGCCTGCAGGCGGAAGCC
GATGCGCAGCGTGTCGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MGNSMQYLGERITLCACATTWIEGEAIRQLEHAATLPGMRRVAGMPDLHPGRGYPVGAAFFSTGQLYPALIGGDIGCGMA
LWQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGFADHAYAASLGTIGSGNHFAEAQRIDAVYDTDAVAALGLDP
DRLLLLVHSGSRGFGQSILEQHMREHGYNGLDDTDAACTAYLARHDAALRYAIANRDLIARRMLARWRTDGRCVLDVNHN
LVSRATVDGEPGWLHRKGATPADAGPVVIPGSRGDYSYLVAPVRPDDAASLASLAHGAGRKWARGDCKGRLERRFTPSQL
TRTPLGSHVICEDRELLYEEAPQAYKPIDSVVDALEAAGLLRKLARLAPVLTYKTSGEAGRC

Sequences:

>Translated_382_residues
MGNSMQYLGERITLCACATTWIEGEAIRQLEHAATLPGMRRVAGMPDLHPGRGYPVGAAFFSTGQLYPALIGGDIGCGMA
LWQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGFADHAYAASLGTIGSGNHFAEAQRIDAVYDTDAVAALGLDP
DRLLLLVHSGSRGFGQSILEQHMREHGYNGLDDTDAACTAYLARHDAALRYAIANRDLIARRMLARWRTDGRCVLDVNHN
LVSRATVDGEPGWLHRKGATPADAGPVVIPGSRGDYSYLVAPVRPDDAASLASLAHGAGRKWARGDCKGRLERRFTPSQL
TRTPLGSHVICEDRELLYEEAPQAYKPIDSVVDALEAAGLLRKLARLAPVLTYKTSGEAGRC
>Mature_381_residues
GNSMQYLGERITLCACATTWIEGEAIRQLEHAATLPGMRRVAGMPDLHPGRGYPVGAAFFSTGQLYPALIGGDIGCGMAL
WQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGFADHAYAASLGTIGSGNHFAEAQRIDAVYDTDAVAALGLDPD
RLLLLVHSGSRGFGQSILEQHMREHGYNGLDDTDAACTAYLARHDAALRYAIANRDLIARRMLARWRTDGRCVLDVNHNL
VSRATVDGEPGWLHRKGATPADAGPVVIPGSRGDYSYLVAPVRPDDAASLASLAHGAGRKWARGDCKGRLERRFTPSQLT
RTPLGSHVICEDRELLYEEAPQAYKPIDSVVDALEAAGLLRKLARLAPVLTYKTSGEAGRC

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=443, Percent_Identity=27.0880361173815, Blast_Score=122, Evalue=6e-28,
Organism=Escherichia coli, GI2367224, Length=407, Percent_Identity=28.2555282555283, Blast_Score=121, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17506665, Length=443, Percent_Identity=27.0880361173815, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24585217, Length=442, Percent_Identity=28.0542986425339, Blast_Score=124, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 40924; Mature: 40793

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSMQYLGERITLCACATTWIEGEAIRQLEHAATLPGMRRVAGMPDLHPGRGYPVGAAF
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHH
FSTGQLYPALIGGDIGCGMALWQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGF
HCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
ADHAYAASLGTIGSGNHFAEAQRIDAVYDTDAVAALGLDPDRLLLLVHSGSRGFGQSILE
CHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCCEEEEEECCCCCHHHHHHH
QHMREHGYNGLDDTDAACTAYLARHDAALRYAIANRDLIARRMLARWRTDGRCVLDVNHN
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEECCC
LVSRATVDGEPGWLHRKGATPADAGPVVIPGSRGDYSYLVAPVRPDDAASLASLAHGAGR
EEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
KWARGDCKGRLERRFTPSQLTRTPLGSHVICEDRELLYEEAPQAYKPIDSVVDALEAAGL
CCCCCCHHHHHHHCCCHHHHHCCCCCCEEEECCHHHHHHCCCHHHCCHHHHHHHHHHHHH
LRKLARLAPVLTYKTSGEAGRC
HHHHHHHHHEEEEECCCCCCCC
>Mature Secondary Structure 
GNSMQYLGERITLCACATTWIEGEAIRQLEHAATLPGMRRVAGMPDLHPGRGYPVGAAF
CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHH
FSTGQLYPALIGGDIGCGMALWQTALDARRVSASKLASRLGSIDATPDASWQPLIAAAGF
HCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
ADHAYAASLGTIGSGNHFAEAQRIDAVYDTDAVAALGLDPDRLLLLVHSGSRGFGQSILE
CHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCCEEEEEECCCCCHHHHHHH
QHMREHGYNGLDDTDAACTAYLARHDAALRYAIANRDLIARRMLARWRTDGRCVLDVNHN
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEEECCC
LVSRATVDGEPGWLHRKGATPADAGPVVIPGSRGDYSYLVAPVRPDDAASLASLAHGAGR
EEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
KWARGDCKGRLERRFTPSQLTRTPLGSHVICEDRELLYEEAPQAYKPIDSVVDALEAAGL
CCCCCCHHHHHHHCCCHHHHHCCCCCCEEEECCHHHHHHCCCHHHCCHHHHHHHHHHHHH
LRKLARLAPVLTYKTSGEAGRC
HHHHHHHHHEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]