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The map label for this gene is araH [H]

Identifier: 161525931

GI number: 161525931

Start: 3014132

End: 3015148

Strand: Reverse

Name: araH [H]

Synonym: Bmul_2762

Alternate gene names: 161525931

Gene position: 3015148-3014132 (Counterclockwise)

Preceding gene: 161525932

Following gene: 161525930

Centisome position: 87.43

GC content: 65.88

Gene sequence:

>1017_bases
ATGCAAGTCAACGAAAACCTCGCCAGCGCAGCCGTGAAGCCGTCGGCCGACGCGCTGGTGCCGCAGCAGAGCGATCGCCA
GAAATGGTGGCAGCAGCTCACCGAGTACAGCCTGATCGCGATCTTCGCGGTGATGTTCATCACGATGTCGCTGACGGTCG
ATCACTTCTTCTCGATCGACAACATGCTCGGCCTCGCGCTGTCGATCTCGCAGATCGGGATGGTCGCGTGCACGATGATG
TTCTGTCTCGCGTCGCGCGACTTCGACCTGTCGATCGGCTCGACCGTCGCGTTCTCGGGCGTGCTCTGCGCGATGGTGCT
CAACGCGACCGACAACACGTTCGTCGCGATCGTCGCGGCGGTCGCGGCCGGCGCCGCGATCGGCTTCGTCAACGGCGCGG
TGATCGCCTACCTGCGGATCAACGCGCTGATCACGACGCTCGCGACGATGGAGATCGTGCGCGGGCTCGGCTTCATCGTG
TCGAAGGGGCAGGCGGTCGGCGTGTCGTCGGATACCTTCATCGCGCTCGGCGGGCTCACGCTGTTCGGCGTGTCGCTGCC
GATCTGGGTCACGCTGCTGTGCTTCATCGTGTTCGGCGTGCTGCTGAACCAGACCGTGTACGGCCGCAACACGCTCGCGA
TCGGCGGCAATCCGGAGGCGTCGCGGCTCGCCGGGATCAACGTCGAACGCACGCGCGTCTACATCTTCCTGATCCAGGGC
GCGGTGACGGCGCTCGCGGGCGTGATCCTCGCATCGCGGATCACGTCGGGCCAGCCGAACGCCGCGCAGGGCTTCGAGCT
GAACGTGATCTCGGCGTGCGTGCTCGGCGGCGTGTCGCTGATGGGCGGCCGCGCGACGATCTCGGGCGTCGTGATCGGCG
TGCTGATCATGGGCACCGTCGAGAACGTGATGAACCTGCTGAACATCGACGCGTTCTATCAGTATCTCGTGCGCGGCGCG
ATCCTGCTCGCGGCCGTGCTGCTCGACCAGCTGAAGAACCGCGGCGCACGCGACTGA

Upstream 100 bases:

>100_bases
AGGCGAGCGCGGTGCAGGCGGCGTGACGCCGCCGGGCGCCGGATTCGAATCGATAGCGCGCGGCGCAGGGCCGCGCGATG
CAGGAGCAGGAGACACAACC

Downstream 100 bases:

>100_bases
GCCGCCTACACGGAGACGCTGCATGACCACCGATTCTTCCGCGCGCGACGCGCATGCGAACTATGCGCACTATCCGAGCC
TCGTCGATCGCGCGGTGCTG

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQVNENLASAAVKPSADALVPQQSDRQKWWQQLTEYSLIAIFAVMFITMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLTLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGARD

Sequences:

>Translated_338_residues
MQVNENLASAAVKPSADALVPQQSDRQKWWQQLTEYSLIAIFAVMFITMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLTLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGARD
>Mature_338_residues
MQVNENLASAAVKPSADALVPQQSDRQKWWQQLTEYSLIAIFAVMFITMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLTLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLLNIDAFYQYLVRGA
ILLAAVLLDQLKNRGARD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=318, Percent_Identity=56.2893081761006, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=36.4516129032258, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1788896, Length=331, Percent_Identity=31.7220543806647, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=29.5031055900621, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=48.4848484848485, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=34.6938775510204, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788471, Length=266, Percent_Identity=36.4661654135338, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=30.7377049180328, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=28.3018867924528, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693214, Length=260, Percent_Identity=28.0769230769231, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35555; Mature: 35555

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNENLASAAVKPSADALVPQQSDRQKWWQQLTEYSLIAIFAVMFITMSLTVDHFFSID
CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
VAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSDTFIALGGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHH
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQVNENLASAAVKPSADALVPQQSDRQKWWQQLTEYSLIAIFAVMFITMSLTVDHFFSID
CCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
VAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSDTFIALGGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHH
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ENVMNLLNIDAFYQYLVRGAILLAAVLLDQLKNRGARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]