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The map label for this gene is xerD [C]

Identifier: 161525451

GI number: 161525451

Start: 2493567

End: 2494436

Strand: Reverse

Name: xerD [C]

Synonym: Bmul_2281

Alternate gene names: 161525451

Gene position: 2494436-2493567 (Counterclockwise)

Preceding gene: 161525452

Following gene: 161525450

Centisome position: 72.33

GC content: 54.83

Gene sequence:

>870_bases
ATGAACGATCTCGCCACCCATCTCAGCGGTTTCCTCCGGGAGCATCTTCCTGCGGAACGCAATGCCAGCCAGCACACCTG
TGAAGCGTACGCCTATAGCTTCCAGCTGCTGGTGGAATTTGCAGCCGGCAGGCTGAAATGCAAACCGTCGCAACTGACCC
TTGATCAAATCGATGCTTCAATGATCATGACGTTTCTTGAGCACATAGAGGCCAAGCGAGGCAACTGCGCACGCACCAGA
AACGCGCGTTTGGCCGCCATCAAATCGTTCTTCCGTTACCTCGAATACCGGCTTCCTGCCTATCTCGACCAGTCGCGGCA
GATTCACGCTATCCCGATGAAGAAGACCGATCAAATGCTGATCGACTATCTGACAAGAGAGGAGCTGAAGGCTTTGCTCG
ACTCACCCGACCCGCATTCGCAATCTGGCATCCGAGACCGGGCAATGTTGCATCTGGCCTATGCCTGTGGGCTGCGCGTT
GCAGAGCTGGTTTCCCTTCGGCTCGATCAGTTCGATCCGCGAACGCCTGCGACGATACACATCGTGGGCAAGGGTCGGCG
TGAGCGAGTCCTGCCGTTGTGGAAGGAAGCCGATGATCTGTTCTTCGGTGAAACGTTTCTTCATGTCCAATCTCCGTGTC
ATGGTGGATTGGACTCTAAAGTCACGTGCTACTCAAGGTGGGGTGGACGTCGACCTGATAGTGCTGCTTGTCGGCCAGTT
TCTCGACACGGTCACAACGTACACCTCTTCCGGAAGAAAATTCCAGTACGCCACAAGGAAGTCTGTTGGATCGTTGGTGG
GTGGCAAGTTGGATATCACCAAGTCCATTCAGCTTCGAGCGAGAGGGCTTGGGCACTTATTGGCCTTTGA

Upstream 100 bases:

>100_bases
ACACCAAAGTAACGGACACCTACTGGTACCTTGAGGCAACGCCGGTCTTGCTTGGGCAAATTGCTGAAGCAGCAGAAACG
CTGCATAGGGAGCAAGACCT

Downstream 100 bases:

>100_bases
AAAGAACGTCGCCACCTTTAGCACACCAATCAATAAAATTGTGCTGGTTGCTCTTTCAGAGGTGGAACGTCTTGCTCGTC
TGATTAGACTGCCCGAGGGG

Product: integrase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNDLATHLSGFLREHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDASMIMTFLEHIEAKRGNCARTR
NARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQMLIDYLTREELKALLDSPDPHSQSGIRDRAMLHLAYACGLRV
AELVSLRLDQFDPRTPATIHIVGKGRRERVLPLWKEADDLFFGETFLHVQSPCHGGLDSKVTCYSRWGGRRPDSAACRPV
SRHGHNVHLFRKKIPVRHKEVCWIVGGWQVGYHQVHSASSERAWALIGL

Sequences:

>Translated_289_residues
MNDLATHLSGFLREHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDASMIMTFLEHIEAKRGNCARTR
NARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQMLIDYLTREELKALLDSPDPHSQSGIRDRAMLHLAYACGLRV
AELVSLRLDQFDPRTPATIHIVGKGRRERVLPLWKEADDLFFGETFLHVQSPCHGGLDSKVTCYSRWGGRRPDSAACRPV
SRHGHNVHLFRKKIPVRHKEVCWIVGGWQVGYHQVHSASSERAWALIGL
>Mature_289_residues
MNDLATHLSGFLREHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDASMIMTFLEHIEAKRGNCARTR
NARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQMLIDYLTREELKALLDSPDPHSQSGIRDRAMLHLAYACGLRV
AELVSLRLDQFDPRTPATIHIVGKGRRERVLPLWKEADDLFFGETFLHVQSPCHGGLDSKVTCYSRWGGRRPDSAACRPV
SRHGHNVHLFRKKIPVRHKEVCWIVGGWQVGYHQVHSASSERAWALIGL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=190, Percent_Identity=32.6315789473684, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790244, Length=214, Percent_Identity=28.5046728971963, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33009; Mature: 33009

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLATHLSGFLREHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDAS
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHH
MIMTFLEHIEAKRGNCARTRNARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQML
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCHHHHH
IDYLTREELKALLDSPDPHSQSGIRDRAMLHLAYACGLRVAELVSLRLDQFDPRTPATIH
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
IVGKGRRERVLPLWKEADDLFFGETFLHVQSPCHGGLDSKVTCYSRWGGRRPDSAACRPV
EEECCCCCCCCHHHHCCCHHHHCHHHEEECCCCCCCCCCCEEEEHHCCCCCCCCHHCCCH
SRHGHNVHLFRKKIPVRHKEVCWIVGGWQVGYHQVHSASSERAWALIGL
HHCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCEEEECC
>Mature Secondary Structure
MNDLATHLSGFLREHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDAS
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHH
MIMTFLEHIEAKRGNCARTRNARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQML
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCHHHHH
IDYLTREELKALLDSPDPHSQSGIRDRAMLHLAYACGLRVAELVSLRLDQFDPRTPATIH
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
IVGKGRRERVLPLWKEADDLFFGETFLHVQSPCHGGLDSKVTCYSRWGGRRPDSAACRPV
EEECCCCCCCCHHHHCCCHHHHCHHHEEECCCCCCCCCCCEEEEHHCCCCCCCCHHCCCH
SRHGHNVHLFRKKIPVRHKEVCWIVGGWQVGYHQVHSASSERAWALIGL
HHCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]