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The map label for this gene is yoaB [C]

Identifier: 161524954

GI number: 161524954

Start: 1971439

End: 1971861

Strand: Reverse

Name: yoaB [C]

Synonym: Bmul_1781

Alternate gene names: 161524954

Gene position: 1971861-1971439 (Counterclockwise)

Preceding gene: 161524955

Following gene: 161524953

Centisome position: 57.18

GC content: 65.25

Gene sequence:

>423_bases
ATGCGGTTCGGCGGCACGCGCAGCGTAGCCGCGCCAACCTTCACCCATCATTTACGACCGGAACATTTCATGGCAGTCAT
TCGTCACCACGTCGGGCCGCGCCTGTCCGAAACCGCGATCCACAACGGTACCGTGTACCTGTCCGGCCAGATCGCCGAAG
ACACCACGCAGGACATCCGCGGCCAGACGCGCGAAGTGCTCGGCCATATCGATCGCCTGCTCGCGGAAGCGAACAGCGAC
AAGGCCCATTTGCTGTCCGTGCAGATCTACCTGTCCGATCTCGCGAACTTCGAAGGCATGAACGCCGAGTGGGACGCATG
GGTCGCGCCGGGCAACACGCCGCCGCGCGCAACGGTCGAGGCGAAGCTCGCCGATCCGGCGCTGCTCGTCGAGATCGTGG
TCGTCGCCGCGCAGCGGAGCTGA

Upstream 100 bases:

>100_bases
AATCCCCGGCGTCGGGCATGCGCCCGCGTTCGTCGACGCCGAGCAGATCGCGCTTGCGCGGCGGTTTTTCGTCGAAGCGG
GCGCATAAACGCGTCATAAT

Downstream 100 bases:

>100_bases
TCCGCGTCGAGATGACCGTATTCCGTCAGGCCGTGCGATGACCGAGTCCGTATCCGCTTCCTCCGTCGCGGCGCCGTCGT
TCGACGACGTGCTCGCGTTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRFGGTRSVAAPTFTHHLRPEHFMAVIRHHVGPRLSETAIHNGTVYLSGQIAEDTTQDIRGQTREVLGHIDRLLAEANSD
KAHLLSVQIYLSDLANFEGMNAEWDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS

Sequences:

>Translated_140_residues
MRFGGTRSVAAPTFTHHLRPEHFMAVIRHHVGPRLSETAIHNGTVYLSGQIAEDTTQDIRGQTREVLGHIDRLLAEANSD
KAHLLSVQIYLSDLANFEGMNAEWDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS
>Mature_140_residues
MRFGGTRSVAAPTFTHHLRPEHFMAVIRHHVGPRLSETAIHNGTVYLSGQIAEDTTQDIRGQTREVLGHIDRLLAEANSD
KAHLLSVQIYLSDLANFEGMNAEWDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQRS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=40.3508771929825, Blast_Score=90, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15340; Mature: 15340

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFGGTRSVAAPTFTHHLRPEHFMAVIRHHVGPRLSETAIHNGTVYLSGQIAEDTTQDIR
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHEECCCEEEEECCCCCHHHHHHH
GQTREVLGHIDRLLAEANSDKAHLLSVQIYLSDLANFEGMNAEWDAWVAPGNTPPRATVE
HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCEEE
AKLADPALLVEIVVVAAQRS
ECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFGGTRSVAAPTFTHHLRPEHFMAVIRHHVGPRLSETAIHNGTVYLSGQIAEDTTQDIR
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHEECCCEEEEECCCCCHHHHHHH
GQTREVLGHIDRLLAEANSDKAHLLSVQIYLSDLANFEGMNAEWDAWVAPGNTPPRATVE
HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCEEE
AKLADPALLVEIVVVAAQRS
ECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA