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The map label for this gene is yfcS [H]

Identifier: 161524783

GI number: 161524783

Start: 1778211

End: 1778957

Strand: Reverse

Name: yfcS [H]

Synonym: Bmul_1610

Alternate gene names: 161524783

Gene position: 1778957-1778211 (Counterclockwise)

Preceding gene: 161524784

Following gene: 161524782

Centisome position: 51.59

GC content: 68.14

Gene sequence:

>747_bases
ATGAAGCACTTTCTTTCCCTTCCCGGCGTGCGCCGCACGTCGTCGCTGCTCGCCGCGGCCGGCGCGCTCATCGCCTGCGC
CGCGCACGCGTCGATCGTGCCCGACCGCACGCGCGTGATCTTCAACGAAGGCGAGCAGGCCGCAGTCGTCACGGTGACGA
ACAAGAGCGCGACCTATCCGTATCTCGTGCAGTCGTGGCTCGAGGACGCGAACGGCAAGCGCATCACGTCGCCGCTGATG
GTCGTGCCGCCGCTGCAGCGCGTCGAGGCGAACGAGCGCAACGTGCTGCGCATCGCGAAGCTGCCCGGCGCCGAATTGCC
GGCCGATCGCGAATCGGTGTTCTATCTGAACATCCGCGAAGTGCCGCCGAAGACCGACACGCCGAACACGCTGCAGATCG
CGCTGCATACGCAGATGAAGCTGTTCTACCGGCCGAAGGGCGTGCAGCCCGCGCGCGACGAGGACTGGACGCTGCCGATG
ACGCTGCGCGTCGACACCGCCGCGCATCGGCTCGTGTTCGACAACCCGACGCCGTATCACGTGACGATCGTCGCGCTCGC
CGCGGGCGCGCAGAAGACGCCGGTGCCGATGGATCCGCTGATGGTAAGCCCGATGAGCACGGCCGAGCTGCGGTTCGACG
GCGCGGCGCCGTCGACGCTGTTCGTCACGCACGTCGACGACTACGGCGGCCAGGTCGCGGTCGAGTATGCGTGCGACGCC
GGCGCCTGCAAGAGCGTGAAGCGATGA

Upstream 100 bases:

>100_bases
GCCTGCAACTCGAAGGCACGCCGATTCCGGTCGCGTGCGACATGACGGTCGCGCCGCACGCGGCCGCCCAACCTGAAACG
ATTCACTGACGGATGTTGCG

Downstream 100 bases:

>100_bases
GCGGCGCACGACGACCGCGTGCTGCCGGCCGGCTGCGCGCCTGGTTCGGCTGGAGCGTCTGCGTGCTGCTGATCGCGCTC
GCGCAACCCGCGTGGGCCGT

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKHFLSLPGVRRTSSLLAAAGALIACAAHASIVPDRTRVIFNEGEQAAVVTVTNKSATYPYLVQSWLEDANGKRITSPLM
VVPPLQRVEANERNVLRIAKLPGAELPADRESVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPM
TLRVDTAAHRLVFDNPTPYHVTIVALAAGAQKTPVPMDPLMVSPMSTAELRFDGAAPSTLFVTHVDDYGGQVAVEYACDA
GACKSVKR

Sequences:

>Translated_248_residues
MKHFLSLPGVRRTSSLLAAAGALIACAAHASIVPDRTRVIFNEGEQAAVVTVTNKSATYPYLVQSWLEDANGKRITSPLM
VVPPLQRVEANERNVLRIAKLPGAELPADRESVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPM
TLRVDTAAHRLVFDNPTPYHVTIVALAAGAQKTPVPMDPLMVSPMSTAELRFDGAAPSTLFVTHVDDYGGQVAVEYACDA
GACKSVKR
>Mature_248_residues
MKHFLSLPGVRRTSSLLAAAGALIACAAHASIVPDRTRVIFNEGEQAAVVTVTNKSATYPYLVQSWLEDANGKRITSPLM
VVPPLQRVEANERNVLRIAKLPGAELPADRESVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPM
TLRVDTAAHRLVFDNPTPYHVTIVALAAGAQKTPVPMDPLMVSPMSTAELRFDGAAPSTLFVTHVDDYGGQVAVEYACDA
GACKSVKR

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=218, Percent_Identity=40.8256880733945, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI87082203, Length=226, Percent_Identity=36.283185840708, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1786936, Length=225, Percent_Identity=31.5555555555556, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789532, Length=216, Percent_Identity=32.8703703703704, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1790771, Length=219, Percent_Identity=31.9634703196347, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1786333, Length=239, Percent_Identity=31.3807531380753, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787171, Length=225, Percent_Identity=32.8888888888889, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788428, Length=236, Percent_Identity=27.5423728813559, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786743, Length=213, Percent_Identity=31.4553990610329, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87081806, Length=227, Percent_Identity=25.5506607929515, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27071; Mature: 27071

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHFLSLPGVRRTSSLLAAAGALIACAAHASIVPDRTRVIFNEGEQAAVVTVTNKSATYP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCH
YLVQSWLEDANGKRITSPLMVVPPLQRVEANERNVLRIAKLPGAELPADRESVFYLNIRE
HHHHHHHHCCCCCEECCCEEECCCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEE
VPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPMTLRVDTAAHRLVFDNPTPYH
CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEE
VTIVALAAGAQKTPVPMDPLMVSPMSTAELRFDGAAPSTLFVTHVDDYGGQVAVEYACDA
EEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCC
GACKSVKR
CCHHCCCC
>Mature Secondary Structure
MKHFLSLPGVRRTSSLLAAAGALIACAAHASIVPDRTRVIFNEGEQAAVVTVTNKSATYP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCH
YLVQSWLEDANGKRITSPLMVVPPLQRVEANERNVLRIAKLPGAELPADRESVFYLNIRE
HHHHHHHHCCCCCEECCCEEECCCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEE
VPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPMTLRVDTAAHRLVFDNPTPYH
CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEE
VTIVALAAGAQKTPVPMDPLMVSPMSTAELRFDGAAPSTLFVTHVDDYGGQVAVEYACDA
EEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCC
GACKSVKR
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]