Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 161524728

GI number: 161524728

Start: 1706101

End: 1707291

Strand: Reverse

Name: yfdE [H]

Synonym: Bmul_1555

Alternate gene names: 161524728

Gene position: 1707291-1706101 (Counterclockwise)

Preceding gene: 161524729

Following gene: 161524727

Centisome position: 49.51

GC content: 70.78

Gene sequence:

>1191_bases
ATGACAACACCGCTCGACGGCATCCGTGTGCTCGAACTCGGCCAATTGATCGCCGGGCCGTTCGCCGGCCGGATGCTCGC
CGAATTCGGCGCGGACGTGATCAAGATCGAGCCGCCCGGCGTCGGCGACCCGCTGCGCAAATGGCGGCTGCTGCACGACG
GCACGTCGGTATGGTGGGCCGTGCAGTCGCGCAACAAGTCGTCGGTGACGCTCGATCTGCGCACGCCCGAAGGACAGGAC
GTCGTGCGCCGCCTCGTCGCCGAAGCCGACGTGCTGATCGAGAATTTCCGCCCCGGCACGCTCGAAGGGTGGGGGCTCGG
CTGGGACGCGCTGTCGGCGATCAACCCGCGGCTCGTGATGCTGCGCGTGTCGGGCTACGGGCAGAGCGGCCCGTACCGCG
ACCGGCCGGGCTTCGGGGCGATCGCCGAAGCGATGGGCGGACTGCGGCATCTGACCGGCGAGCCGGGCCGTACGCCGGTG
CGCGTCGGCATCTCGCTCGGCGATTCGCTGTCCGCGCTGCACGGCGTGATCGGCGTGCTGCTCGCGCTGCGGCATCGCGA
TCGGCCGGGCGGCACCGGGCAGGTCGTCGACGTCGCGCTGTACGAGTCGGTCTTCAACATGATGGAAAGCCTGCTGCCCG
AATACGCTGTGTTCGGCACGGTGCGCCAGCCGTCCGGCAGCAGCCTGCCCGGCATTGCGCCGACCAACGCGTATCGCTGC
CGCGACGGCAAGTACGCATTGATCGCCGGCAACGGCGACAGCATCTTCCGGCGGCTGATGGACGTGATCGGCCGCGCCGA
CCTCGGCCAGGATCCCGCGCTCGCGCACAACGACGGCCGCGTCGCGCAGGTCGAGCGCCTCGATGCGGCGATCGGCGCCT
GGACCGCGCAGCACGATCTCGACGACGTGCTCGCCGCGCTGCATGAAGCGCGCATTCCGTCGGGCCGCATCTACGACGTC
GCGGACATCGCGTCCGATCCGCACTACCGTGCGCGCGACATGATCGTCGACGATGCGCTGCCCGACGGCACGCCGGTGCT
CGTGCCGGGCATCGTGCCGAAGCTCGCCGCGACGCCGGGACGCATCGAACGGCCCGCGCCCGCACTCGGCGCGGATACCG
ACACGGTGCTCGAATCGCTCGGCATCGATGCGGCGACGCGCGACGACTGGCGCGCTCGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
TCCGAAATGGAAAGGGCGCTTGAGCATCGATCGATTTTCGCGCCGCGCAAACGCAGTCATGATCGCCGCCATGAACCCCA
TTACCTGATCGGAGACAGTC

Downstream 100 bases:

>100_bases
CGGAGGCTCGACATGAACGCTCGACACCAACGGTACAAACCGCTCCATCTGCACGAAGTCGCGCCGCGCGACGGTTTCCA
GAACGAAGCGGCATTCGTCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTTPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKIEPPGVGDPLRKWRLLHDGTSVWWAVQSRNKSSVTLDLRTPEGQD
VVRRLVAEADVLIENFRPGTLEGWGLGWDALSAINPRLVMLRVSGYGQSGPYRDRPGFGAIAEAMGGLRHLTGEPGRTPV
RVGISLGDSLSALHGVIGVLLALRHRDRPGGTGQVVDVALYESVFNMMESLLPEYAVFGTVRQPSGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMDVIGRADLGQDPALAHNDGRVAQVERLDAAIGAWTAQHDLDDVLAALHEARIPSGRIYDV
ADIASDPHYRARDMIVDDALPDGTPVLVPGIVPKLAATPGRIERPAPALGADTDTVLESLGIDAATRDDWRARGVI

Sequences:

>Translated_396_residues
MTTPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKIEPPGVGDPLRKWRLLHDGTSVWWAVQSRNKSSVTLDLRTPEGQD
VVRRLVAEADVLIENFRPGTLEGWGLGWDALSAINPRLVMLRVSGYGQSGPYRDRPGFGAIAEAMGGLRHLTGEPGRTPV
RVGISLGDSLSALHGVIGVLLALRHRDRPGGTGQVVDVALYESVFNMMESLLPEYAVFGTVRQPSGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMDVIGRADLGQDPALAHNDGRVAQVERLDAAIGAWTAQHDLDDVLAALHEARIPSGRIYDV
ADIASDPHYRARDMIVDDALPDGTPVLVPGIVPKLAATPGRIERPAPALGADTDTVLESLGIDAATRDDWRARGVI
>Mature_395_residues
TTPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKIEPPGVGDPLRKWRLLHDGTSVWWAVQSRNKSSVTLDLRTPEGQDV
VRRLVAEADVLIENFRPGTLEGWGLGWDALSAINPRLVMLRVSGYGQSGPYRDRPGFGAIAEAMGGLRHLTGEPGRTPVR
VGISLGDSLSALHGVIGVLLALRHRDRPGGTGQVVDVALYESVFNMMESLLPEYAVFGTVRQPSGSSLPGIAPTNAYRCR
DGKYALIAGNGDSIFRRLMDVIGRADLGQDPALAHNDGRVAQVERLDAAIGAWTAQHDLDDVLAALHEARIPSGRIYDVA
DIASDPHYRARDMIVDDALPDGTPVLVPGIVPKLAATPGRIERPAPALGADTDTVLESLGIDAATRDDWRARGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=378, Percent_Identity=28.042328042328, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI300863124, Length=404, Percent_Identity=26.7326732673267, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI300863126, Length=378, Percent_Identity=26.4550264550265, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI13376042, Length=404, Percent_Identity=23.2673267326733, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI266456254, Length=381, Percent_Identity=27.2965879265092, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI42794625, Length=381, Percent_Identity=27.2965879265092, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=33.0798479087452, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI266458397, Length=244, Percent_Identity=34.8360655737705, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI266458395, Length=128, Percent_Identity=40.625, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=128, Percent_Identity=41.40625, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=350, Percent_Identity=32.8571428571429, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1788717, Length=403, Percent_Identity=31.5136476426799, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1786222, Length=401, Percent_Identity=28.6783042394015, Blast_Score=149, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI115535051, Length=270, Percent_Identity=31.4814814814815, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=278, Percent_Identity=30.2158273381295, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24648431, Length=380, Percent_Identity=31.3157894736842, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24585488, Length=363, Percent_Identity=30.3030303030303, Blast_Score=121, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42405; Mature: 42274

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKIEPPGVGDPLRKWRLLHDGTSVWWA
CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
VQSRNKSSVTLDLRTPEGQDVVRRLVAEADVLIENFRPGTLEGWGLGWDALSAINPRLVM
EECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEE
LRVSGYGQSGPYRDRPGFGAIAEAMGGLRHLTGEPGRTPVRVGISLGDSLSALHGVIGVL
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
LALRHRDRPGGTGQVVDVALYESVFNMMESLLPEYAVFGTVRQPSGSSLPGIAPTNAYRC
HHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMDVIGRADLGQDPALAHNDGRVAQVERLDAAIGAWTAQHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
DDVLAALHEARIPSGRIYDVADIASDPHYRARDMIVDDALPDGTPVLVPGIVPKLAATPG
HHHHHHHHHHCCCCCCEEEHHHHCCCCCCHHHHEEEECCCCCCCCEEECCCHHHHCCCCC
RIERPAPALGADTDTVLESLGIDAATRDDWRARGVI
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
TTPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKIEPPGVGDPLRKWRLLHDGTSVWWA
CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
VQSRNKSSVTLDLRTPEGQDVVRRLVAEADVLIENFRPGTLEGWGLGWDALSAINPRLVM
EECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEE
LRVSGYGQSGPYRDRPGFGAIAEAMGGLRHLTGEPGRTPVRVGISLGDSLSALHGVIGVL
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
LALRHRDRPGGTGQVVDVALYESVFNMMESLLPEYAVFGTVRQPSGSSLPGIAPTNAYRC
HHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMDVIGRADLGQDPALAHNDGRVAQVERLDAAIGAWTAQHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
DDVLAALHEARIPSGRIYDVADIASDPHYRARDMIVDDALPDGTPVLVPGIVPKLAATPG
HHHHHHHHHHCCCCCCEEEHHHHCCCCCCHHHHEEEECCCCCCCCEEECCCHHHHCCCCC
RIERPAPALGADTDTVLESLGIDAATRDDWRARGVI
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]