Click here to switch to the map view.

The map label for this gene is ynfJ [C]

Identifier: 161524695

GI number: 161524695

Start: 1678117

End: 1679886

Strand: Reverse

Name: ynfJ [C]

Synonym: Bmul_1522

Alternate gene names: 161524695

Gene position: 1679886-1678117 (Counterclockwise)

Preceding gene: 161524696

Following gene: 161524693

Centisome position: 48.71

GC content: 68.08

Gene sequence:

>1770_bases
ATGCTTCGCGTCGTTTTCCATCGCCCCCTGTCAGCCGTGCTCTCGTTCCTGCTGAAGCTGCGCACCCGCGCACAGACGCT
GTTCCGCCTGTCGGATGCCCATACGATGCTGATCTGGTCGGCGATCGTCGGTGTCGGCGGCGCGTTCGCGACCATCGCGT
TTCGCGAAGGGATCGACCTGATGCAGCATCTGATCGCCGGGCGCAGCGGCAGCTTCGTGCAGATGGCGCGCAGCCTGCCG
TGGTACGTGCGCTTCTGGCTGCCGGCCGCCGGCGGCCTGCTCGCGGGCGGCGTGCTGCTGCTCGCGACGCGCGGCGAACG
CAAGTCCGGCAAGACCGACTATATGGAAGCCGTCGCGCTCGGCAACGGCATCGTGCCCGTACGGCAGAGCCTGTGGCGCA
GCCTGTCGTCGCTGCTGACGATCGGCAGCGGCGGCTCGATCGGCCGCGAAGGTCCGATGGTGCAACTCGCGGCGCTCGCC
GCGTCGCTCGTCGGCCGCTTCGCGCATTTCGATCCGCCGCGCCTGCGGCTGCTCGTCGCGTGCGGCGCGGCGGCCGGCAT
CACGTCCGCGTACAACGCGCCGATCGCCGGCGCGTTCTTCGTCTCCGAAATCGTGCTCGGTACGATCGCGATGGAAAGCT
TCGGGCCGATGGTCGTCGCGTCGGTCGTCGCGAACATCGTGATGCGCGAGTTCGCCGGCTATCGGCCGCCGTACGAGATG
CCTGTGTTTCCGGCCGTCACGGGCCCCGAGGTGCTGCTGTTCGTCGTGCTCGGCGCGCTCTGCGGCGTGCTCGCGCCGCA
GTTCCTGCATCTGCTCGACGCATCGAAGAACCAGTTGAAGCGGCTGCCCGTGCCGCTGCCGGTGCGGCTCGCGCTCGGCG
GGCTCGTGGTCGGCGTGATCTCGGTGTGGATTCCGGATGTATGGGGCAACGGCTACAGCGTCGTGAACAACATCCTGCAT
TCGCCGTGGACCTGGCAGGCGCTCGTCGCGGTGCTCGTGTTCAAGGTGCTCGCCACTGCCGCGACGACGGGCTCGGGCGC
GATCGGCGGCGTGTTCACGCCGACGCTGTTCGTCGGCGCGGTATTCGGCTCGCTGTTCGGGCTCGCGATGAACGCGCTGT
GGCCGGGCCACACGTCCGCGTACTTCGCCTATGCGATCGTCGGGATGGGCGCGTTCATGGCGGGCGCGACGCAGGCGCCG
CTGATGGCGATCCTGATGATCTTCGAGATGACGCTCAGCTATCAGGTCGTGCTGCCGCTGATGGTGTCGTGCGTGTTCGC
GTATTTCGTCGCGCGCGCGACCGGCACGACGTCGATGTACGAGATCACGCTGCGCCATCACCAGGACGCGGCCGAGCGCA
TGCGGCTGCGCACCACGCAGATGCGCGAGCTGATCCAGCCCGCGCAGACGGTCGTGCCGCTCACGGCGAGCGTCGCCGAC
ATGACGCGCGTGTTTCTCGAATATCCGGTGAAGTATCTGTACGTGACCGACGACGCCGGGCGCTTTCGCGGTGCGGTCGC
GCTGAAGGACATCACGTCCGACCTGCTCGACAAGCGCGACACGACCGACAAGACGGCCGCGCACTATGCGCACACGCCGT
TTCCGCTGCTCACGCCCGACATGCCGCTCGCCACCGCGCTCGAACGCTTCATGGCGTTCAAGGGTGAACGTCTGCCGGTG
ATCGAGAGCGAGGCCGAGCCGACGCTCGCGGGCGTCGTGTACAAGACCTCGCTGCTCGACGCGTATCGGCGCATGACCGG
CGAGCGCTGA

Upstream 100 bases:

>100_bases
ATCACGTGGGCCGTGCAGCACTGGCTTGGCTGAGCCGCACGTCCGCACCGCTTCGCGCGCCGCGCCCGACGGGGATCTCC
CGCGGGCGCGGCGCAGTGCT

Downstream 100 bases:

>100_bases
GCCGCCGCGCCGCCGTCAGTCGGGCGCGCGCCCCAGCACGACACGCGCGAAGAAGCCGGCCAGCACCGATTCGGCGGCCT
CGGCCGACACGTGCTGCGGA

Product: putative voltage-gated ClC-type chloride channel ClcB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MLRVVFHRPLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAIVGVGGAFATIAFREGIDLMQHLIAGRSGSFVQMARSLP
WYVRFWLPAAGGLLAGGVLLLATRGERKSGKTDYMEAVALGNGIVPVRQSLWRSLSSLLTIGSGGSIGREGPMVQLAALA
ASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVSEIVLGTIAMESFGPMVVASVVANIVMREFAGYRPPYEM
PVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQLKRLPVPLPVRLALGGLVVGVISVWIPDVWGNGYSVVNNILH
SPWTWQALVAVLVFKVLATAATTGSGAIGGVFTPTLFVGAVFGSLFGLAMNALWPGHTSAYFAYAIVGMGAFMAGATQAP
LMAILMIFEMTLSYQVVLPLMVSCVFAYFVARATGTTSMYEITLRHHQDAAERMRLRTTQMRELIQPAQTVVPLTASVAD
MTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPDMPLATALERFMAFKGERLPV
IESEAEPTLAGVVYKTSLLDAYRRMTGER

Sequences:

>Translated_589_residues
MLRVVFHRPLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAIVGVGGAFATIAFREGIDLMQHLIAGRSGSFVQMARSLP
WYVRFWLPAAGGLLAGGVLLLATRGERKSGKTDYMEAVALGNGIVPVRQSLWRSLSSLLTIGSGGSIGREGPMVQLAALA
ASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVSEIVLGTIAMESFGPMVVASVVANIVMREFAGYRPPYEM
PVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQLKRLPVPLPVRLALGGLVVGVISVWIPDVWGNGYSVVNNILH
SPWTWQALVAVLVFKVLATAATTGSGAIGGVFTPTLFVGAVFGSLFGLAMNALWPGHTSAYFAYAIVGMGAFMAGATQAP
LMAILMIFEMTLSYQVVLPLMVSCVFAYFVARATGTTSMYEITLRHHQDAAERMRLRTTQMRELIQPAQTVVPLTASVAD
MTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPDMPLATALERFMAFKGERLPV
IESEAEPTLAGVVYKTSLLDAYRRMTGER
>Mature_589_residues
MLRVVFHRPLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAIVGVGGAFATIAFREGIDLMQHLIAGRSGSFVQMARSLP
WYVRFWLPAAGGLLAGGVLLLATRGERKSGKTDYMEAVALGNGIVPVRQSLWRSLSSLLTIGSGGSIGREGPMVQLAALA
ASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVSEIVLGTIAMESFGPMVVASVVANIVMREFAGYRPPYEM
PVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQLKRLPVPLPVRLALGGLVVGVISVWIPDVWGNGYSVVNNILH
SPWTWQALVAVLVFKVLATAATTGSGAIGGVFTPTLFVGAVFGSLFGLAMNALWPGHTSAYFAYAIVGMGAFMAGATQAP
LMAILMIFEMTLSYQVVLPLMVSCVFAYFVARATGTTSMYEITLRHHQDAAERMRLRTTQMRELIQPAQTVVPLTASVAD
MTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPDMPLATALERFMAFKGERLPV
IESEAEPTLAGVVYKTSLLDAYRRMTGER

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

Organism=Homo sapiens, GI55770838, Length=498, Percent_Identity=22.6907630522088, Blast_Score=77, Evalue=6e-14,
Organism=Homo sapiens, GI55770840, Length=498, Percent_Identity=22.6907630522088, Blast_Score=77, Evalue=7e-14,
Organism=Escherichia coli, GI87081943, Length=422, Percent_Identity=38.1516587677725, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI1786350, Length=444, Percent_Identity=27.2522522522523, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 63534; Mature: 63534

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVVFHRPLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAIVGVGGAFATIAFREGIDL
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
MQHLIAGRSGSFVQMARSLPWYVRFWLPAAGGLLAGGVLLLATRGERKSGKTDYMEAVAL
HHHHHCCCCCHHHHHHHCCCCEEEEHHHCCCHHHHCCEEEEEECCCCCCCCHHHHHHHHH
GNGIVPVRQSLWRSLSSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHEE
CGAAAGITSAYNAPIAGAFFVSEIVLGTIAMESFGPMVVASVVANIVMREFAGYRPPYEM
CCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
PVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQLKRLPVPLPVRLALGGLVVGVI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHH
SVWIPDVWGNGYSVVNNILHSPWTWQALVAVLVFKVLATAATTGSGAIGGVFTPTLFVGA
HHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VFGSLFGLAMNALWPGHTSAYFAYAIVGMGAFMAGATQAPLMAILMIFEMTLSYQVVLPL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
MVSCVFAYFVARATGTTSMYEITLRHHQDAAERMRLRTTQMRELIQPAQTVVPLTASVAD
HHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPD
HHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCC
MPLATALERFMAFKGERLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRVVFHRPLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAIVGVGGAFATIAFREGIDL
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
MQHLIAGRSGSFVQMARSLPWYVRFWLPAAGGLLAGGVLLLATRGERKSGKTDYMEAVAL
HHHHHCCCCCHHHHHHHCCCCEEEEHHHCCCHHHHCCEEEEEECCCCCCCCHHHHHHHHH
GNGIVPVRQSLWRSLSSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHEE
CGAAAGITSAYNAPIAGAFFVSEIVLGTIAMESFGPMVVASVVANIVMREFAGYRPPYEM
CCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
PVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQLKRLPVPLPVRLALGGLVVGVI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHH
SVWIPDVWGNGYSVVNNILHSPWTWQALVAVLVFKVLATAATTGSGAIGGVFTPTLFVGA
HHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VFGSLFGLAMNALWPGHTSAYFAYAIVGMGAFMAGATQAPLMAILMIFEMTLSYQVVLPL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
MVSCVFAYFVARATGTTSMYEITLRHHQDAAERMRLRTTQMRELIQPAQTVVPLTASVAD
HHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPD
HHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCC
MPLATALERFMAFKGERLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]