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The map label for this gene is radA [H]

Identifier: 161524412

GI number: 161524412

Start: 1361322

End: 1362698

Strand: Direct

Name: radA [H]

Synonym: Bmul_1239

Alternate gene names: 161524412

Gene position: 1361322-1362698 (Clockwise)

Preceding gene: 161524411

Following gene: 161524413

Centisome position: 39.48

GC content: 69.28

Gene sequence:

>1377_bases
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTCGCGAAACGCGCGC
CCGTCCAGCGCCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAGGGCGCCGCCCCGGCCGCCGAGCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATTGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTACTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAATGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTACGCGGCGTCGCGAACCCGTCCGCGTTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGTCCGCTGCTGGTCGAAATCCAGGCGCTCGTCGACACCGCGCATGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAAGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTGGAATGA

Upstream 100 bases:

>100_bases
TCGATCGACGACGTCGCGCGCCATTGCGGGACGATCGGCTACGAGCTCATGTGCGCGGTCGCGGCCCGCGTGCCGGTGCG
GGCGGAATAAGGGCGCGCGC

Downstream 100 bases:

>100_bases
GCGCACAGCCGAGCGGCAGGGCGCGCGATCTGTCGCGTAATTCACTGTAAAGAATATGTAGGCCGCGGTAACCTGCCGGA
CACGACTTTTTCCTATCCTT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Sequences:

>Translated_458_residues
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE
>Mature_457_residues
AKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVLG
GGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQA
AIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHVP
NPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAG
EIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=58.3877995642701, Blast_Score=534, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48754; Mature: 48623

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVD
CCCCCEEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHC
IEAADVPRFSTGIGEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYI
CCCCCCCCHHCCHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQAAIDAERPDVAVIDSIQTVY
ECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHEE
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVT
CCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEE
QEGTRPLLVEIQALVDTAHVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHC
GGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
FTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE
CCEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVD
CCCCEEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHC
IEAADVPRFSTGIGEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYI
CCCCCCCCHHCCHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
SGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQAAIDAERPDVAVIDSIQTVY
ECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHEE
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVT
CCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEE
QEGTRPLLVEIQALVDTAHVPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAV
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHC
GGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLAGEIRPSPRGQERLREAAKLG
CCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
FTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE
CCEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]