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The map label for this gene is yjjV [H]

Identifier: 161524333

GI number: 161524333

Start: 1275880

End: 1276668

Strand: Direct

Name: yjjV [H]

Synonym: Bmul_1158

Alternate gene names: 161524333

Gene position: 1275880-1276668 (Clockwise)

Preceding gene: 161524332

Following gene: 161524334

Centisome position: 37.0

GC content: 68.06

Gene sequence:

>789_bases
ATGTGGATCGACACGCATTGTCATCTCGATGCCGCCGAATTCGACGGCGACCGCGACGCGGTCGCGCACGCGGCCCGCAC
GGCCGGCGTGTCGCGCATCGTGATTCCGAGCGTCGGGCGCGACAATTTCACGACCGTGCGCGAGCTCGCGCACCGTACGC
CGGGCGCCGTCTTTGCGCTCGGCATTCATCCGCTGTTTACGCCGCAAGCGCGCGACGAGGATCTCGATCGGCTGCGCATG
GAGATCGAGGCGAGCATGGACGATCCGCGCTTCGTCGCGATCGGCGAAATCGGCCTCGACTATTTCGTGCCGGGCCTCGA
CGAGGACCGCCAGCAGTTCTTCTATCAGGGGCAGCTGCGGCTTGCGCGCGAATTCGACCTGCCGGTGCTGTGCCATGTCC
GCAAGTCGCAGGATCGTGTGCTCGCGGGCCTGCGGCGCGCGGGCGTGCGGCGCGGCATCGCGCATGCGTTCAACGGCAGC
TTCCAGCAGGCCGAAGCGTATCTCGCCCATGGCCTGCATCTCGGTTTCGGCGGCAACGTGACGTTCGAGCGCGCGCGGCA
GATCCGCCGGCTCGCGACGCAGTTGCCGCTCGACGCGATCGTCGTCGAGACCGACGCGCCCGACATCGCGCCCGAATGGG
CATACAAGTCGCGCAACACGCCCGACCAGATTCCGCGCATCGGCGACGTGCTCGCGGAACTGCGCGGCATCGACGCGCAC
GCGCTGTCCCTATCCACTTCGGCTAACGCGCTTGCCGCGCTGCCGCGCCTCGCGCTTTCGTCCGCATAA

Upstream 100 bases:

>100_bases
GAGCCGGCGCTGCCGGTGTAAACGACGAACGCCCGCGTGCCGGGCCTGCCGCGTGCGGCTCGGCGCGGCGGCGCGGCGCA
CGGGATGCAGGAGTGCCGAC

Downstream 100 bases:

>100_bases
TCGTTGCCGCAGGGCGCCGCTTGCACATGCGCAAGCGGGGCGCCGGTTCGGCAAGGAGGCGGGATGCGCGGGTGGTGGAT
GGCGTTTGCGCTCGGCGTCG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDAAEFDGDRDAVAHAARTAGVSRIVIPSVGRDNFTTVRELAHRTPGAVFALGIHPLFTPQARDEDLDRLRM
EIEASMDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLRLAREFDLPVLCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQAEAYLAHGLHLGFGGNVTFERARQIRRLATQLPLDAIVVETDAPDIAPEWAYKSRNTPDQIPRIGDVLAELRGIDAH
ALSLSTSANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWIDTHCHLDAAEFDGDRDAVAHAARTAGVSRIVIPSVGRDNFTTVRELAHRTPGAVFALGIHPLFTPQARDEDLDRLRM
EIEASMDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLRLAREFDLPVLCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQAEAYLAHGLHLGFGGNVTFERARQIRRLATQLPLDAIVVETDAPDIAPEWAYKSRNTPDQIPRIGDVLAELRGIDAH
ALSLSTSANALAALPRLALSSA
>Mature_262_residues
MWIDTHCHLDAAEFDGDRDAVAHAARTAGVSRIVIPSVGRDNFTTVRELAHRTPGAVFALGIHPLFTPQARDEDLDRLRM
EIEASMDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLRLAREFDLPVLCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQAEAYLAHGLHLGFGGNVTFERARQIRRLATQLPLDAIVVETDAPDIAPEWAYKSRNTPDQIPRIGDVLAELRGIDAH
ALSLSTSANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=32.2097378277154, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=32.2097378277154, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=31.3868613138686, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=30.078125, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=31.7391304347826, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI225903424, Length=167, Percent_Identity=31.1377245508982, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87082439, Length=235, Percent_Identity=39.1489361702128, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=31.7647058823529, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI48994985, Length=255, Percent_Identity=29.8039215686275, Blast_Score=107, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=259, Percent_Identity=25.0965250965251, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=23.826714801444, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221330018, Length=214, Percent_Identity=29.4392523364486, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24586117, Length=214, Percent_Identity=29.4392523364486, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=26.2589928057554, Blast_Score=79, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28906; Mature: 28906

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDAAEFDGDRDAVAHAARTAGVSRIVIPSVGRDNFTTVRELAHRTPGAVFAL
CCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEE
GIHPLFTPQARDEDLDRLRMEIEASMDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHH
LAREFDLPVLCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQAEAYLAHGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEECCCCCC
TFERARQIRRLATQLPLDAIVVETDAPDIAPEWAYKSRNTPDQIPRIGDVLAELRGIDAH
CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
ALSLSTSANALAALPRLALSSA
EEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDAAEFDGDRDAVAHAARTAGVSRIVIPSVGRDNFTTVRELAHRTPGAVFAL
CCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEE
GIHPLFTPQARDEDLDRLRMEIEASMDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHH
LAREFDLPVLCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQAEAYLAHGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEECCCCCC
TFERARQIRRLATQLPLDAIVVETDAPDIAPEWAYKSRNTPDQIPRIGDVLAELRGIDAH
CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
ALSLSTSANALAALPRLALSSA
EEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]