Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 161524102

GI number: 161524102

Start: 1014670

End: 1015551

Strand: Reverse

Name: yddE [C]

Synonym: Bmul_0926

Alternate gene names: 161524102

Gene position: 1015551-1014670 (Counterclockwise)

Preceding gene: 161524103

Following gene: 161524101

Centisome position: 29.45

GC content: 73.24

Gene sequence:

>882_bases
ATGTCCGGCCGCCTCGTTCGCTTCGCGCAGGTCGACGTGTTCACGTCGGTGCCGTTCAAGGGCAATCCGCTCGCGGTCGT
ATTCGACGCCGATTCGCTCGACCACGACGCGATGCTCGCCATCGCCCGCTGGACGAACCTGTCGGAAACGACGTTCGTCT
GCACGCCGACCGATCCGGACGCCGACTATCGCGTGCGGATCTTCACGCCGGCCGGCGAGCTGCCGTTCGCCGGCCACCCG
ACGCTCGGCACCGCGCACGCGTTCCTCGCGAGCGGCGCGCGGCCGCGCACGGCGGGCCGGCTCGTTCAGCAATGCGGCGT
CGGCCGCGTCGTGCTGCGCGAACAGGGCGACGGCTGGGCGTTCGCCGCGCCGCCGGCGCGCTTCACGCCGGTCGATCGTG
CGGATTACGCGGCGCTCGCCGCCGCATTGCGCTCCGACGCGATCGATCCGGATGCCGAAGCGTGCGCGGTCGACAACGGC
GCACCCTGGCTCGTCGTGCGCCTGACGTCGGCCGACGCGTGCATCGGCCTCGCGCCCGATCCGGCCGCGCTCGAAGCGAT
CACGCATCGCTACGGCACGCACGGGCTCGCCGCCTATGCGCCGCATGCGGCCGGCGGCCCCGCGACGTTCGAAATCCGCT
GCCTGATGACGGGCGGCGGCTTCGGCCTCGGCGAGGATCCGGTCACCGGCAGCGCGAACGCCGCGCTGGCCGGCCTGCTC
ACGCGCCAGCAACGGCGCCCGGGCGCGTCCTATACGGCCCGCCAGGGCACCGCGATCGGCCGCGACGGCCGCGTGTCGGT
CCACTACGACGCCGACGGCACGACGTGGATCGGCGGCAGCACGGTCACCATCGTCGACGGCACGTTCCGTCTTCCCGCCT
GA

Upstream 100 bases:

>100_bases
GATGCGGGCAAGCATGCACGCTCGGCGTTCGGCGTCGCGCAGATTCCGCTCGGCGCGTGCGTCGAGATCGAACTGATCGT
CGAAGTCGCGTAATACGCCG

Downstream 100 bases:

>100_bases
CGGTTTCCCGTCCCGAGGGCGCTCGTCCGCGGCGCCCTTCCCCCCGCTATCGCAAAACCGCACCAGCCAGTAATATCGGG
CCTAACCCGTTGCTTCGGAC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSGRLVRFAQVDVFTSVPFKGNPLAVVFDADSLDHDAMLAIARWTNLSETTFVCTPTDPDADYRVRIFTPAGELPFAGHP
TLGTAHAFLASGARPRTAGRLVQQCGVGRVVLREQGDGWAFAAPPARFTPVDRADYAALAAALRSDAIDPDAEACAVDNG
APWLVVRLTSADACIGLAPDPAALEAITHRYGTHGLAAYAPHAAGGPATFEIRCLMTGGGFGLGEDPVTGSANAALAGLL
TRQQRRPGASYTARQGTAIGRDGRVSVHYDADGTTWIGGSTVTIVDGTFRLPA

Sequences:

>Translated_293_residues
MSGRLVRFAQVDVFTSVPFKGNPLAVVFDADSLDHDAMLAIARWTNLSETTFVCTPTDPDADYRVRIFTPAGELPFAGHP
TLGTAHAFLASGARPRTAGRLVQQCGVGRVVLREQGDGWAFAAPPARFTPVDRADYAALAAALRSDAIDPDAEACAVDNG
APWLVVRLTSADACIGLAPDPAALEAITHRYGTHGLAAYAPHAAGGPATFEIRCLMTGGGFGLGEDPVTGSANAALAGLL
TRQQRRPGASYTARQGTAIGRDGRVSVHYDADGTTWIGGSTVTIVDGTFRLPA
>Mature_292_residues
SGRLVRFAQVDVFTSVPFKGNPLAVVFDADSLDHDAMLAIARWTNLSETTFVCTPTDPDADYRVRIFTPAGELPFAGHPT
LGTAHAFLASGARPRTAGRLVQQCGVGRVVLREQGDGWAFAAPPARFTPVDRADYAALAAALRSDAIDPDAEACAVDNGA
PWLVVRLTSADACIGLAPDPAALEAITHRYGTHGLAAYAPHAAGGPATFEIRCLMTGGGFGLGEDPVTGSANAALAGLLT
RQQRRPGASYTARQGTAIGRDGRVSVHYDADGTTWIGGSTVTIVDGTFRLPA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=291, Percent_Identity=29.2096219931272, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI74316009, Length=240, Percent_Identity=30.8333333333333, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI1787737, Length=267, Percent_Identity=30.7116104868914, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6321818, Length=297, Percent_Identity=35.016835016835, Blast_Score=165, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30545; Mature: 30413

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRLVRFAQVDVFTSVPFKGNPLAVVFDADSLDHDAMLAIARWTNLSETTFVCTPTDPD
CCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEECCCCCC
ADYRVRIFTPAGELPFAGHPTLGTAHAFLASGARPRTAGRLVQQCGVGRVVLREQGDGWA
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCEE
FAAPPARFTPVDRADYAALAAALRSDAIDPDAEACAVDNGAPWLVVRLTSADACIGLAPD
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEECCC
PAALEAITHRYGTHGLAAYAPHAAGGPATFEIRCLMTGGGFGLGEDPVTGSANAALAGLL
HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
TRQQRRPGASYTARQGTAIGRDGRVSVHYDADGTTWIGGSTVTIVDGTFRLPA
HHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEECCCEEEEEECEEECCC
>Mature Secondary Structure 
SGRLVRFAQVDVFTSVPFKGNPLAVVFDADSLDHDAMLAIARWTNLSETTFVCTPTDPD
CCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEECCCCCC
ADYRVRIFTPAGELPFAGHPTLGTAHAFLASGARPRTAGRLVQQCGVGRVVLREQGDGWA
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCEE
FAAPPARFTPVDRADYAALAAALRSDAIDPDAEACAVDNGAPWLVVRLTSADACIGLAPD
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEECCC
PAALEAITHRYGTHGLAAYAPHAAGGPATFEIRCLMTGGGFGLGEDPVTGSANAALAGLL
HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
TRQQRRPGASYTARQGTAIGRDGRVSVHYDADGTTWIGGSTVTIVDGTFRLPA
HHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCEEECCCEEEEEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]