| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is fadN [H]
Identifier: 161523759
GI number: 161523759
Start: 631482
End: 633917
Strand: Direct
Name: fadN [H]
Synonym: Bmul_0579
Alternate gene names: 161523759
Gene position: 631482-633917 (Clockwise)
Preceding gene: 161523758
Following gene: 161523760
Centisome position: 18.31
GC content: 66.71
Gene sequence:
>2436_bases GTGAGCAATTTCCTGATTCGCAAGGTGGCCGTGCTGGGCGCCGGCGTGATGGGCGCGCAGATCGCCGCGCATCTCGTCAA CGCGCGCGTGCCCGTGCTGCTGTTCGACCTGCCGGCCAAGGAAGGCCCGAAAAACGCGATCGCGCTGAAGGCGATCGAGA ATCTGAAGAAGCTGTCGCCCGCGCCGTTCGGCGTGAAGGACGACGCGAAATACCTCGAAGCCGCGAACTACGACGACGAC ATCGCGAAGCTCGCCGAGTGCGACGTCGTGATCGAGGCGATCGCCGAGCGGATGGACTGGAAGCACGACCTCTACAAGAA GGTCGCGCCGCACATCGGCCCGAACGCGATCTTCGCGACGAACACCTCGGGCCTGTCGATCACGAAGCTGTCCGAAGGGT TTTCGGACGAACTGAAGGCGCGCTTCTGCGGCGTGCACTTCTTCAATCCGCCGCGCTACATGCACCTCGTCGAGCTGATC CCGACCGCGCATACGCGTCCGGAGATTCTCGACCAGCTCGAGACGTTCCTGACGAGCGTCGTCGGCAAGGGCGTCGTGCG CGCGAAGGATACGCCGAACTTCATCGCGAACCGCGTCGGCATCTTCTCGATCCTCGCGGTGATCACCGAAGCCGCGAAGT TCGGCCTGCGTTTCGACGAAGTCGACGATCTGACGGGTAGCCGCCTCGGTCGCGCGAAGTCGGCGACGTTCCGCACCGCG GACGTGGTCGGCCTCGACACGATGGCGCACGTGATCAAGACGATGCAGGACAACCTCGCCGACGATCCGTTCTTCCCGGT CTACCAGACGCCGGCCGTACTCGCCGAGCTCGTGAAGCAGGGCGCGCTCGGCCAGAAGACGGGCGCCGGCTTCTACAAGA AGGAAGGCAAGGCGATCAAGGTGCTCGACGCGAAGACGGGCAGCTACGTCGATTCGGGTGCGAAGGCCGACGAAACGGTC GCGCGCATCCTGAAGCGTCCGCCGGCCGAGCGGCTGAAGCTGCTGCGCGAAACCAACCATCCGCATGCGCAGTTCCTCTG GTCGATCTTCCGCGACGTGTTCCACTACATCGGCGTGCATCTCGAGTCGATCGCCGACAATGCGCGCGACGTCGACCTCG CGATCCGCTGGGGCTTCGGCTGGAACGAAGGCCCGTTCGAAGGCTGGCAGGCGGCCGGCTGGAAGCAGGTCGCCGAGTGG GTGCAGGACGACATCGCGGCCGGCAAGGCGCTCGCCAACGTGCCGCTGCCCGCATGGGTGCTCGAAGGGCCGGTCGCGGA GAAGGGCGGCGTGCACACGGCCGAAGGCTCGTGGGCGCCGGCGTCGAAGCGCTTCGTGCCGCGTTCGGATCTGCCGGTGT ACCGCAAGCAGGTGTTCCGCGCGCCGTTGCTCGGCGAAGCCGGCGCCGATCCGAAGACGTACGGCAAGACGCTGTTCGAG ACCGACTCGGTGCGTGCGTGGGTCGACGATCGCACGGGCGAGGACGACGTCGTGATCGTCTCGTTCAAGTCGAAGATGAA TACGATCGGCCCGGGCGTGATCGACGGTCTCGTGCAGGCGATCGAACTCGCCGAGAAGGACTACAAGGGCGTCGTGATCT GGCAGCCGACCTCGCTGAAGCTCGGCACGCCGGGCGGCCCGTTCTCGGCCGGCGCGAACCTCGAAGAGGCGATGCCCGCC TTCATGATGGGCGGCGCGAAGGGCATCGAGCCGTTCGTGAAGAAGTTCCAGGAAGGCATGCTGCGCGTGAAGTACGCGAA CGTGCCGGTCGTCGCGGCCGTGTCGGGCATCGCGCTCGGCGGCGGGTGCGAGCTGATGCTGCACAGCGCGAAGCGCGTCG TGCACGTCGAGAGCTACATCGGCCTCGTCGAAGTGGGCGTGGGCCTCGTGCCGGCCGGCGGCGGGCTGAAGGAAGCGGCA CTGCGCGCGGCGGACGCCGCCGCGGCCGCGAACGCCACCACCGACCTGCTGAAGTTCGTGACGAAGTCGTTCGAGAACGC GGCGATGGCGAAGGTGTCGTCGTCCGCGCACGATGCGCGCGCGATGGGCTACGTGAAGCCGTCCGACACGATCGTCTTCA ACGTGTTCGAACTGCTCGACACCGCGAAGAAGGAAGCGCGTGCGCTCGCCGACACCGGCTATCGTGCGCCGCTGCGTGCG AAGGACGTGCCGGTCGCGGGCCGCTCGGCGATCGCGACGATCAAGGCGCAGCTCGTGAACATGCGCGACGGGCGCTTCAT CAGCGACCACGACTTCCTGATCGCGAGCCGCATCGCGGAAGCGGTGTGCGGCGGCGACGTCGAGGCGGGCAGCCTCGTCG ACGAGGAATGGCTGCTGGCGCTCGAGCGTCGTGCGTTCGTCGAGCTGCTCGGCACGCAGAAGACGCAGGAACGGATCATG GGCATGTTGCAGACCGGCAAGCCGGTGCGTAACTGA
Upstream 100 bases:
>100_bases CGGCGCGCAGCCTGCGCCGCCCGGCCGCAACGGTTCCTGGTACTCGTTTCGCCGTGCAGCCGTTCCGATTCGCGCTGCAC GACACTATCGGAGACATCCC
Downstream 100 bases:
>100_bases GCGAGCGATAAGGCAAGGAGTTTCAAATGAGCAAACAACTGCAAGACGCATACATCGTCGCCGCCAGCCGCACGCCGATC GGCAAGGCCCCGCGCGGCGT
Product: 3-hydroxyacyl-CoA dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MSNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAKYLEAANYDDD IAKLAECDVVIEAIAERMDWKHDLYKKVAPHIGPNAIFATNTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELI PTAHTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGAGFYKKEGKAIKVLDAKTGSYVDSGAKADETV ARILKRPPAERLKLLRETNHPHAQFLWSIFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQDDIAAGKALANVPLPAWVLEGPVAEKGGVHTAEGSWAPASKRFVPRSDLPVYRKQVFRAPLLGEAGADPKTYGKTLFE TDSVRAWVDDRTGEDDVVIVSFKSKMNTIGPGVIDGLVQAIELAEKDYKGVVIWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAA LRAADAAAAANATTDLLKFVTKSFENAAMAKVSSSAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA KDVPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN
Sequences:
>Translated_811_residues MSNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAKYLEAANYDDD IAKLAECDVVIEAIAERMDWKHDLYKKVAPHIGPNAIFATNTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELI PTAHTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGAGFYKKEGKAIKVLDAKTGSYVDSGAKADETV ARILKRPPAERLKLLRETNHPHAQFLWSIFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQDDIAAGKALANVPLPAWVLEGPVAEKGGVHTAEGSWAPASKRFVPRSDLPVYRKQVFRAPLLGEAGADPKTYGKTLFE TDSVRAWVDDRTGEDDVVIVSFKSKMNTIGPGVIDGLVQAIELAEKDYKGVVIWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAA LRAADAAAAANATTDLLKFVTKSFENAAMAKVSSSAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA KDVPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN >Mature_810_residues SNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAKYLEAANYDDDI AKLAECDVVIEAIAERMDWKHDLYKKVAPHIGPNAIFATNTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELIP TAHTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTAD VVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGAGFYKKEGKAIKVLDAKTGSYVDSGAKADETVA RILKRPPAERLKLLRETNHPHAQFLWSIFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWV QDDIAAGKALANVPLPAWVLEGPVAEKGGVHTAEGSWAPASKRFVPRSDLPVYRKQVFRAPLLGEAGADPKTYGKTLFET DSVRAWVDDRTGEDDVVIVSFKSKMNTIGPGVIDGLVQAIELAEKDYKGVVIWQPTSLKLGTPGGPFSAGANLEEAMPAF MMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAAL RAADAAAAANATTDLLKFVTKSFENAAMAKVSSSAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRAK DVPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQERIMG MLQTGKPVRN
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Mitochondria or Peroxisomes [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI296179429, Length=299, Percent_Identity=32.1070234113712, Blast_Score=122, Evalue=2e-27, Organism=Homo sapiens, GI296179427, Length=312, Percent_Identity=30.7692307692308, Blast_Score=117, Evalue=4e-26, Organism=Homo sapiens, GI68989263, Length=426, Percent_Identity=24.4131455399061, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI261878539, Length=426, Percent_Identity=24.4131455399061, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI20127408, Length=425, Percent_Identity=26.1176470588235, Blast_Score=90, Evalue=8e-18, Organism=Escherichia coli, GI1787661, Length=323, Percent_Identity=30.030959752322, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI1790281, Length=220, Percent_Identity=29.0909090909091, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1788682, Length=350, Percent_Identity=24, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17553560, Length=299, Percent_Identity=32.7759197324415, Blast_Score=119, Evalue=9e-27, Organism=Caenorhabditis elegans, GI17563036, Length=294, Percent_Identity=31.6326530612245, Blast_Score=115, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17549919, Length=297, Percent_Identity=31.986531986532, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17558304, Length=388, Percent_Identity=27.8350515463918, Blast_Score=100, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17508951, Length=388, Percent_Identity=29.1237113402062, Blast_Score=97, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17508953, Length=388, Percent_Identity=29.1237113402062, Blast_Score=97, Evalue=5e-20, Organism=Caenorhabditis elegans, GI25144276, Length=289, Percent_Identity=32.5259515570934, Blast_Score=96, Evalue=7e-20, Organism=Caenorhabditis elegans, GI71985923, Length=417, Percent_Identity=26.1390887290168, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71985930, Length=409, Percent_Identity=22.4938875305623, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI24583077, Length=454, Percent_Identity=24.0088105726872, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24583079, Length=454, Percent_Identity=24.0088105726872, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI19921000, Length=457, Percent_Identity=23.8512035010941, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI45549573, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =1.1.1.35 [H]
Molecular weight: Translated: 87575; Mature: 87443
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSP CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC APFGVKDDAKYLEAANYDDDIAKLAECDVVIEAIAERMDWKHDLYKKVAPHIGPNAIFAT CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEE NTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELIPTAHTRPEILDQLETFLTSV CCCCCEEEHHHCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGAGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE VLDAKTGSYVDSGAKADETVARILKRPPAERLKLLRETNHPHAQFLWSIFRDVFHYIGVH EEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQDDIAAGKALANVPLPAWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCHHHHCCCCCHHH LEGPVAEKGGVHTAEGSWAPASKRFVPRSDLPVYRKQVFRAPLLGEAGADPKTYGKTLFE HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCHHHC TDSVRAWVDDRTGEDDVVIVSFKSKMNTIGPGVIDGLVQAIELAEKDYKGVVIWQPTSLK CCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHCEEEC GGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAALRAADAAAAANATTDLLKFV CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHH TKSFENAAMAKVSSSAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA HHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KDVPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSLVDEEWLLA CCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNFLIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNAIALKAIENLKKLSP CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC APFGVKDDAKYLEAANYDDDIAKLAECDVVIEAIAERMDWKHDLYKKVAPHIGPNAIFAT CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEE NTSGLSITKLSEGFSDELKARFCGVHFFNPPRYMHLVELIPTAHTRPEILDQLETFLTSV CCCCCEEEHHHCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFPVYQTPAVLAELVKQGALGQKTGAGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE VLDAKTGSYVDSGAKADETVARILKRPPAERLKLLRETNHPHAQFLWSIFRDVFHYIGVH EEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQDDIAAGKALANVPLPAWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCHHHHCCCCCHHH LEGPVAEKGGVHTAEGSWAPASKRFVPRSDLPVYRKQVFRAPLLGEAGADPKTYGKTLFE HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCHHHC TDSVRAWVDDRTGEDDVVIVSFKSKMNTIGPGVIDGLVQAIELAEKDYKGVVIWQPTSLK CCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQEGMLRVKYANVPVVAAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHCEEEC GGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAALRAADAAAAANATTDLLKFV CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHH TKSFENAAMAKVSSSAHDARAMGYVKPSDTIVFNVFELLDTAKKEARALADTGYRAPLRA HHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KDVPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSLVDEEWLLA CCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]