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The map label for this gene is rsmD [H]

Identifier: 161523673

GI number: 161523673

Start: 540192

End: 540806

Strand: Direct

Name: rsmD [H]

Synonym: Bmul_0493

Alternate gene names: 161523673

Gene position: 540192-540806 (Clockwise)

Preceding gene: 161523671

Following gene: 161523674

Centisome position: 15.66

GC content: 70.73

Gene sequence:

>615_bases
ATGTCCCGTTCCTCTTCCGGCCGCTCTGCGGCCTCGTCCGCTCGCGGCAAGCCGCATACGATCCGCATCATCGGCGGCGA
CTGGAAACGCACGCCGCTTGCGGTGCTCGACCTCGACGGCCTGCGTCCGACGCCCGATCGCGTGCGCGAGACGCTGTTCA
ACTGGCTCGGCCAGGATCTCGAAGGCCGGCGCTGTCTGGACCTGTTCGCGGGCACCGGCGCGCTCGGTTTCGAAGCCGCG
TCGCGCGGCGCGGCGAACGTCGTGATGGTCGAACGCCATCCGCGCGCCGCGCAGCAGCTGCGTGCGATCAAGGACAAGCT
CGGCGCGCGCACGGTCGAGATCGCCGAGGCCGATGCGCTGCGGCTCGCGGCCGGGCTCGCGCCGCGCTCGTTCGACGTCG
TGTTCCTCGATCCGCCGTTCGGCGATGCGGCCGCGCTCGCGCGCGCGATCGCGCTGACCGCGCCGCTCGTCGCCGACGGC
GGTGCACTGTACGTCGAGTCCGGCGTCGAGCTCGACCTTTCCGCACACGACGCGCTCGCGGGCTGGCAGGTCGCGAAACA
CGGCAAGGCCGGCGCGGTCCACTATCATTTGCTGCGGCGCGAAAATGATGAATAA

Upstream 100 bases:

>100_bases
GCGACGCGCTCGCGTCAGCACGCGCCGCCGCTGTGGTAACGTGCGCCTGTTTGCCGGCATGCCGGTGCGCATGCCCGTTC
TCCCGTCCCGATATTCCTGT

Downstream 100 bases:

>100_bases
TGCGCGTTCCAAAAGAGGCGGCGCGCCCGAACGGCGACGCACGTCCATCTGTGCAGTGGCGTGCACGTCGCACCGCTGCT
TCCCCGTTTGCGTGATGACA

Product: methyltransferase

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSRSSSGRSAASSARGKPHTIRIIGGDWKRTPLAVLDLDGLRPTPDRVRETLFNWLGQDLEGRRCLDLFAGTGALGFEAA
SRGAANVVMVERHPRAAQQLRAIKDKLGARTVEIAEADALRLAAGLAPRSFDVVFLDPPFGDAAALARAIALTAPLVADG
GALYVESGVELDLSAHDALAGWQVAKHGKAGAVHYHLLRRENDE

Sequences:

>Translated_204_residues
MSRSSSGRSAASSARGKPHTIRIIGGDWKRTPLAVLDLDGLRPTPDRVRETLFNWLGQDLEGRRCLDLFAGTGALGFEAA
SRGAANVVMVERHPRAAQQLRAIKDKLGARTVEIAEADALRLAAGLAPRSFDVVFLDPPFGDAAALARAIALTAPLVADG
GALYVESGVELDLSAHDALAGWQVAKHGKAGAVHYHLLRRENDE
>Mature_203_residues
SRSSSGRSAASSARGKPHTIRIIGGDWKRTPLAVLDLDGLRPTPDRVRETLFNWLGQDLEGRRCLDLFAGTGALGFEAAS
RGAANVVMVERHPRAAQQLRAIKDKLGARTVEIAEADALRLAAGLAPRSFDVVFLDPPFGDAAALARAIALTAPLVADGG
ALYVESGVELDLSAHDALAGWQVAKHGKAGAVHYHLLRRENDE

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=183, Percent_Identity=42.0765027322404, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 21705; Mature: 21574

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSSSGRSAASSARGKPHTIRIIGGDWKRTPLAVLDLDGLRPTPDRVRETLFNWLGQDL
CCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
EGRRCLDLFAGTGALGFEAASRGAANVVMVERHPRAAQQLRAIKDKLGARTVEIAEADAL
CCCHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEHHHHHH
RLAAGLAPRSFDVVFLDPPFGDAAALARAIALTAPLVADGGALYVESGVELDLSAHDALA
HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEECCCEEEEECCCEEEECCCCHHH
GWQVAKHGKAGAVHYHLLRRENDE
CCHHHCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
SRSSSGRSAASSARGKPHTIRIIGGDWKRTPLAVLDLDGLRPTPDRVRETLFNWLGQDL
CCCCCCCCHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
EGRRCLDLFAGTGALGFEAASRGAANVVMVERHPRAAQQLRAIKDKLGARTVEIAEADAL
CCCHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEHHHHHH
RLAAGLAPRSFDVVFLDPPFGDAAALARAIALTAPLVADGGALYVESGVELDLSAHDALA
HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEECCCEEEEECCCEEEECCCCHHH
GWQVAKHGKAGAVHYHLLRRENDE
CCHHHCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]