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The map label for this gene is ymdB [C]

Identifier: 161523631

GI number: 161523631

Start: 495087

End: 495611

Strand: Direct

Name: ymdB [C]

Synonym: Bmul_0451

Alternate gene names: 161523631

Gene position: 495087-495611 (Clockwise)

Preceding gene: 161523630

Following gene: 161523634

Centisome position: 14.36

GC content: 70.67

Gene sequence:

>525_bases
ATGCTGCAGATCGGTTCCACCACGCTCGACGCGCAATGCGTCGACATCACGACGCTCGAGGTCGACGCGATCGTCAACGC
CGCGAACGGCTCGCTGCTCGGTGGCGGCGGCGTCGACGGCGCCATCCACCGGGCGGCCGGCCCGGGCCTGCTCGCCGAAT
GCCGCACGCTCGGCGGCTGCGATACCGGCGATGCGAAACTCACGCGCGGACATCGGCTGCCGGCGCGCTACGTGATCCAC
GCGGTCGGGCCCGTATGGCACGGCGGCGATCGCGGCGAGCCGCGTCTGCTCGCATCGTGCTACCGGCGCGCGATCGAGCT
GGCCGACGAAGCGGGCGCCACGTCGATCGCGTTTCCGGCGATCAGCTGCGGGATCTACCGCTATCCGGCGGACCGCGCGG
TCGACATCGCGGTCGGCACGGTCGTCGAGATGCTGCCGCAGGCGCCCGGCATCACGCGCGTGATATTCGCGTGCTTTTCT
CCCGACATTTACGACCTGTATCGCGCCCGGCTCGCACGCGCGTAG

Upstream 100 bases:

>100_bases
GAGTAATGTCTACGGCGCAACGCGCGCCGACGCGCATTCGCGCACGGCGCGCGAATGCGCACTACGCTTGAACCGTCTCC
GGCGTTTTCGGGAGGGTGTC

Downstream 100 bases:

>100_bases
CGGCGCCCGCTCGCGTGCCGCGTCATGCGCCGCCTTCGAAGCCGGCCTGGCGCCAGGCTTCGAACACGACCACGGCGACC
GTATTCGACAGGTTCATGCT

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLQIGSTTLDAQCVDITTLEVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCDTGDAKLTRGHRLPARYVIH
AVGPVWHGGDRGEPRLLASCYRRAIELADEAGATSIAFPAISCGIYRYPADRAVDIAVGTVVEMLPQAPGITRVIFACFS
PDIYDLYRARLARA

Sequences:

>Translated_174_residues
MLQIGSTTLDAQCVDITTLEVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCDTGDAKLTRGHRLPARYVIH
AVGPVWHGGDRGEPRLLASCYRRAIELADEAGATSIAFPAISCGIYRYPADRAVDIAVGTVVEMLPQAPGITRVIFACFS
PDIYDLYRARLARA
>Mature_174_residues
MLQIGSTTLDAQCVDITTLEVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCDTGDAKLTRGHRLPARYVIH
AVGPVWHGGDRGEPRLLASCYRRAIELADEAGATSIAFPAISCGIYRYPADRAVDIAVGTVVEMLPQAPGITRVIFACFS
PDIYDLYRARLARA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=159, Percent_Identity=54.0880503144654, Blast_Score=166, Evalue=8e-42,
Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=53.4591194968553, Blast_Score=156, Evalue=7e-39,
Organism=Homo sapiens, GI207450721, Length=146, Percent_Identity=39.041095890411, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI8923143, Length=146, Percent_Identity=39.041095890411, Blast_Score=98, Evalue=3e-21,
Organism=Homo sapiens, GI154813199, Length=137, Percent_Identity=38.6861313868613, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI20336746, Length=165, Percent_Identity=29.0909090909091, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI226371718, Length=140, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI226371716, Length=140, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI226371714, Length=140, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI226371712, Length=140, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI226371710, Length=140, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI226371706, Length=140, Percent_Identity=34.2857142857143, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI93141018, Length=171, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI93141020, Length=171, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI4758496, Length=171, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=5e-12,
Organism=Escherichia coli, GI1787283, Length=163, Percent_Identity=49.079754601227, Blast_Score=147, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17538214, Length=148, Percent_Identity=47.2972972972973, Blast_Score=123, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24586353, Length=133, Percent_Identity=37.593984962406, Blast_Score=81, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18219; Mature: 18219

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIGSTTLDAQCVDITTLEVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGC
CCCCCCCCCCCEEEEEEEEEHHHEEECCCCCEEECCCCCCHHHHCCCCCHHHHHHHCCCC
DTGDAKLTRGHRLPARYVIHAVGPVWHGGDRGEPRLLASCYRRAIELADEAGATSIAFPA
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
ISCGIYRYPADRAVDIAVGTVVEMLPQAPGITRVIFACFSPDIYDLYRARLARA
HHCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MLQIGSTTLDAQCVDITTLEVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGC
CCCCCCCCCCCEEEEEEEEEHHHEEECCCCCEEECCCCCCHHHHCCCCCHHHHHHHCCCC
DTGDAKLTRGHRLPARYVIHAVGPVWHGGDRGEPRLLASCYRRAIELADEAGATSIAFPA
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
ISCGIYRYPADRAVDIAVGTVVEMLPQAPGITRVIFACFSPDIYDLYRARLARA
HHCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]