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The map label for this gene is yodB [C]

Identifier: 161523185

GI number: 161523185

Start: 7465

End: 7998

Strand: Reverse

Name: yodB [C]

Synonym: Bmul_0005

Alternate gene names: 161523185

Gene position: 7998-7465 (Counterclockwise)

Preceding gene: 161523186

Following gene: 161523184

Centisome position: 0.23

GC content: 63.11

Gene sequence:

>534_bases
ATGATGAAGGCTTCTACGACTTTCAGTTTGCCGGCGCGCGTGCTGCATTGGGTGATGGCTGCGATGGTGCTCACGATGCT
GTTCGTCGGCGTGGGGATGGTGGCGTCGGTGTCCGAGCGGCACGATTTTCTGGTGGCGCTGCATAAGCCGCTGGGTGTGG
CCGTGCTGGTGCTCGTTTGTGTGCGGATCGTGGTGCGGCTTTCGTCGAAGCCGCCGGCGTTGCCTGACGATTTGCCGTGG
TGGCAGAAGGTGGCGGCGCATGGGTCGCATCTCGTGCTGTATGCGTTGATGGTGGCGATGCCGCTGATCGGGTGGGCGAT
GCTGTCGGCGGGTGGGTATCCGGTGACGTTGGGTGGCGGTGTGCAGTTGCCCGCGATCGTTGCGGCGAATCCGGTGACGT
TCGCGTGGCTCAGGGTCGCGCATCGCGTGCTGGCTTATCTGTTCTTTTTGACGTTCCTCGCGCATTTTGGCGCGGCGCTT
TATCACGGGTTGATTCGGAGGGATGGGGTGCTGCGGGCGATGGTGGGGAGGTGA

Upstream 100 bases:

>100_bases
TGCTGGCGGCGCGGTCCGCGGCGTATGCGGATTCGTATCTGCGCAGGACAAGCGAAGAGGCCGGCGTGGCCGACGCGGCG
CGGTTGAGTGCGGAGGGACG

Downstream 100 bases:

>100_bases
GGGCGGGGCGTTGCCGTGCTCACGTCTGTAACGGTTGATGACGGAAGTGATTGGCGTTGAGCCAGCCGTGGATGAAGCAA
GGGCCGCGTGAAGCGGCCTG

Product: cytochrome B561

Products: NA

Alternate protein names: Cytochrome; Type-B Cytochrome; Cytochrome B-Like Protein; Cytochrome B/B6 Domain; Nickel-Dependent Hydrogenase

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MMKASTTFSLPARVLHWVMAAMVLTMLFVGVGMVASVSERHDFLVALHKPLGVAVLVLVCVRIVVRLSSKPPALPDDLPW
WQKVAAHGSHLVLYALMVAMPLIGWAMLSAGGYPVTLGGGVQLPAIVAANPVTFAWLRVAHRVLAYLFFLTFLAHFGAAL
YHGLIRRDGVLRAMVGR

Sequences:

>Translated_177_residues
MMKASTTFSLPARVLHWVMAAMVLTMLFVGVGMVASVSERHDFLVALHKPLGVAVLVLVCVRIVVRLSSKPPALPDDLPW
WQKVAAHGSHLVLYALMVAMPLIGWAMLSAGGYPVTLGGGVQLPAIVAANPVTFAWLRVAHRVLAYLFFLTFLAHFGAAL
YHGLIRRDGVLRAMVGR
>Mature_177_residues
MMKASTTFSLPARVLHWVMAAMVLTMLFVGVGMVASVSERHDFLVALHKPLGVAVLVLVCVRIVVRLSSKPPALPDDLPW
WQKVAAHGSHLVLYALMVAMPLIGWAMLSAGGYPVTLGGGVQLPAIVAANPVTFAWLRVAHRVLAYLFFLTFLAHFGAAL
YHGLIRRDGVLRAMVGR

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082013, Length=180, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1787296, Length=166, Percent_Identity=28.9156626506024, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19191; Mature: 19191

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKASTTFSLPARVLHWVMAAMVLTMLFVGVGMVASVSERHDFLVALHKPLGVAVLVLVC
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VRIVVRLSSKPPALPDDLPWWQKVAAHGSHLVLYALMVAMPLIGWAMLSAGGYPVTLGGG
HHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
VQLPAIVAANPVTFAWLRVAHRVLAYLFFLTFLAHFGAALYHGLIRRDGVLRAMVGR
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure
MMKASTTFSLPARVLHWVMAAMVLTMLFVGVGMVASVSERHDFLVALHKPLGVAVLVLVC
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VRIVVRLSSKPPALPDDLPWWQKVAAHGSHLVLYALMVAMPLIGWAMLSAGGYPVTLGGG
HHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
VQLPAIVAANPVTFAWLRVAHRVLAYLFFLTFLAHFGAALYHGLIRRDGVLRAMVGR
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA