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The map label for this gene is secD [H]

Identifier: 161501848

GI number: 161501848

Start: 438370

End: 440226

Strand: Reverse

Name: secD [H]

Synonym: VV1_0443

Alternate gene names: 161501848

Gene position: 440226-438370 (Counterclockwise)

Preceding gene: 27363912

Following gene: 27363910

Centisome position: 13.41

GC content: 47.55

Gene sequence:

>1857_bases
GTGCTGAACCGTTATCCTTTATGGAAGTACTTGATGGTTATGTTTGCCATTGCCATCGCTGCCTTGTACGCACTTCCAAA
TATCTACGGTGAAGATCCGGCTATTCAAGTTACAGGGGCGCGTGGCGCCTCTGTAGATATGTCAACGCTGGATGCTGTCA
CTAACGCTCTTAATAAAGAGAATCTTTCCCATAAATCCATTGCTTTAGAGAATGGATCCATTCTTGTTCGTTTTAACGAC
ACCGATACGCAAATTAGTGCTCGTGATGTGATCAGTGAAGCGTTGGGCAAAGACAAAATTGTTGCTCTGAACTTAGCACC
TTCAACGCCAGACTGGCTTGAATCGATAGGTGCTGCTCCTATGAAACTGGGTCTTGACCTACGTGGTGGTGTGCACTTCT
TGATGGAAGTGGATATGGATGCCGCGATGGAAAAGCTGGTGGGGCAACAAGAAGATGCTTTCCGTAGTGAACTTCGTGAT
GCAAAAATTCGCTATCGCTCTATTCGCCCTGTTGGCAGTGATGCGATCGAAGTGTTGCTCAGAGATGGTGAAGAGCTATC
TCAAGCAAAACGTGAACTTGAAAAATTGCATCCTGATATGGCTTTTGTCGAATCAGACAAAGATGGCCGTTACGCCTTAA
TTGCTACCTTTACTGAAACCCGTCTGCAAGAAATCCGTAACTACGCTGTTGAACAGAACATCACCATTCTACGTAACCGT
GTGAATGAGCTAGGTGTTGCTGAGCCACTTGTTCAACGTCAAGGTGCTAGCCGTATCGTGGTTGAACTGCCAGGTGTGCA
AGATACTGCTCGTGCCAAAGAGATTCTAGGTGCGACAGCAACGCTAGAATTCCGTGAAGTGGATGACAAAGCGGATCTTG
CTGCTGCGGCAAGTGGTCGAGCGCCTGCGGGCAGCGAGATTAAGCAAGATCGTAATGGCCGTCCTGTGGTGTTGAAGAAA
CGCGTTATTCTCAGTGGGGCAAGCATTACCGATGCAAGTTCAAGTGTTGATGAATATGGTCGTCCTCAAGTAAACATCTC
GCTAGACAGCGAAGGTGGTAACAAGATGGCTGCGTTTTCGAAGAAAAACATTGGCAAGCTAATGGCCACGGTGTTTGCGG
AATACAAAGACAGCGGTCGTAAGTCTCCAGAAGGCAAAGTCATTTTGACCAAGCATGAGGAAGTCATTAACCAAGCCACG
ATCCAGTCGGCTCTTGGTCGTAACTTCCGCATTACGGGTATCGATTCTGCTGCTGAAGCACATAACCTTGCGTTGCTACT
GCGTGCTGGTGCTTTGATCGCACCTATCTCAATCGTTGAAGAGCGTACCATTGGTCCATCAATGGGTCAGCAAAACATCG
ATATGGGTATCCAAGCGTGTATTTGGGGTATGGTTGCGGTGATGCTGTTCACACTGCTTTACTACCGCAAGTTTGGTCTG
ATTGCGAACGTCGCCTTGATGGCAAACCTTGTCCTGATCATCGGTGTGATGTCCATGATTCCAGGTGCGACGATGACGCT
ACCAGGTATTGCCGGTATTGTTCTAACGGTCGGTATGGCGGTCGATGCAAACGTACTGATCTTTGAGCGTATTCGTGAAG
AGCTGCGTGAAGGACGCAATCCTCAGCAAGCGATTCACCAAGGTTATGCCAATGCATTTAGCACCATTGCGGATGCGAAC
ATCACAACCTTGATTACCGCGATTATTCTATTTGCCGTCGGTACGGGTGCAATCAAAGGCTTTGCTGTGACGCTCTCTAT
CGGCATTTTGACCTCAATGTTTACGGCCATTATTGGTACACGTTGTATCGTGAACCTGCTTTATGGTGGTAAACGCATTA
ATAAACTGTCGATCTAA

Upstream 100 bases:

>100_bases
TAACCCAAACAACGAAGTTGTGATCAAAAAAGACTTCGTTACCGCTGTGCTACCAAAAGGTACGCTTAAATCTCTATAAA
ACAGCTAGAGGATCCTCGCT

Downstream 100 bases:

>100_bases
GGCTGGGAATTGTTATGTTTCAAATTCTAAAAGCAGAGAAAACGATCGACTTTATGCGTTGGTCGAAATTCGCATTTGTC
TTCTCTTTATTGATGATCGG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGASVDMSTLDAVTNALNKENLSHKSIALENGSILVRFND
TDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRD
AKIRYRSIRPVGSDAIEVLLRDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNR
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKK
RVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEEVINQAT
IQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGL
IANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADAN
ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI

Sequences:

>Translated_618_residues
MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGASVDMSTLDAVTNALNKENLSHKSIALENGSILVRFND
TDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRD
AKIRYRSIRPVGSDAIEVLLRDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNR
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKK
RVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEEVINQAT
IQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGL
IANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADAN
ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI
>Mature_618_residues
MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGASVDMSTLDAVTNALNKENLSHKSIALENGSILVRFND
TDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRD
AKIRYRSIRPVGSDAIEVLLRDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNR
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKK
RVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEEVINQAT
IQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGL
IANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADAN
ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=62.7831715210356, Blast_Score=790, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66867; Mature: 66867

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGASVDMSTLDAVTNALNKE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC
NLSHKSIALENGSILVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAP
CCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKIRYRSIRPVGSDAIEVLL
HHCCCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNR
HCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHH
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGR
HHHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHEEEEHHCCCHHHHHHHCCCC
APAGSEIKQDRNGRPVVLKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFS
CCCCCHHHHCCCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCEEEEEEECCCCCCEEHHH
KKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSAAEA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCCCHHHH
HNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGL
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRN
HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGT
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RCIVNLLYGGKRINKLSI
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNRYPLWKYLMVMFAIAIAALYALPNIYGEDPAIQVTGARGASVDMSTLDAVTNALNKE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC
NLSHKSIALENGSILVRFNDTDTQISARDVISEALGKDKIVALNLAPSTPDWLESIGAAP
CCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKIRYRSIRPVGSDAIEVLL
HHCCCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RDGEELSQAKRELEKLHPDMAFVESDKDGRYALIATFTETRLQEIRNYAVEQNITILRNR
HCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHH
VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGR
HHHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHEEEEHHCCCHHHHHHHCCCC
APAGSEIKQDRNGRPVVLKKRVILSGASITDASSSVDEYGRPQVNISLDSEGGNKMAAFS
CCCCCHHHHCCCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCEEEEEEECCCCCCEEHHH
KKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSAAEA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCCCHHHH
HNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGL
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRN
HHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGT
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RCIVNLLYGGKRINKLSI
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]