Click here to switch to the map view.

The map label for this gene is yidZ [H]

Identifier: 161486774

GI number: 161486774

Start: 3783767

End: 3784726

Strand: Reverse

Name: yidZ [H]

Synonym: t3675

Alternate gene names: 161486774

Gene position: 3784726-3783767 (Counterclockwise)

Preceding gene: 29143970

Following gene: 29143968

Centisome position: 78.98

GC content: 54.06

Gene sequence:

>960_bases
ATGAAGAAATCCCTTACCAGTCTCGATCTTAATCTGCTGTTATGCCTACAGTTACTCATGCAGGAGCGCAGCGTCACTAA
AGCTGCAAAACGGATGAACGTAACGCCCTCTGCGGTCAGCAAATCGCTGGCGAAACTCCGGGCATGGTTTGACGATCCGC
TGTTCGTCAATACGCCGCTGGGCCTGGCGCCGACGCCGCTGATGGTCAGTATGGAGCAAAGTCTGGCGGACTGGATGCAG
ATGGGGAATCAACTGCTTGATAAGCCACATCATCAAACGCCGCGCGGTTTAAAATTTGAGTTGGCGGCAGAGTCGCCGCT
GATGATGATTATGTTTAATTCACTGTCGCAGCAGATTTATCAGCGCTATCCGCAGGCTACCATTAAGGTTCGCAACTGGG
ATTATGACTCGCTGGAGGCGATTACGCGCGGGAAAGTCGATATCGGATTTACCGGACGCGAAAGCCATCCCCGCTCGCGA
GAGTTGATCAGTCTGTTGCCGCTCGCGATTGACTTTGAGGTACTGTTTAGCGATTTACCGTGGGTCTGGCTGCAGGAAGA
TCATCCGGCACTGCGCGAAGCGTGGGATCTGGACACTTTTCTGCGCTACCCGCATATCAGTATTTGCTGGGAGCAAAGCG
ATACCTGGGCGCTGGATGATGTCCTACAAGAAATGGGACGCAAACGCCATATCGCGTTAAGCCTGCCGGGGTTCGAGCAG
TCGCTCTTTATGGCCGCCCAGCCGGGTCACACCCTGATAGCAACCGCGCCGCGCTATTGCCAGCACTACAATCAGCTCCA
CCAGCTACCGTTAGTGGCGCGCCCCCTGCCTTTTGATGCGCAACAGCGGGAAAAGCTGATGGTGCCGTTTACCCTATTAT
GGCACAAACGTAATAGTCATAATCCCAAGATTGTGTGGCTACGACAGGCTATCAACACGCTCTGCCGTCGCCTTATCTGA

Upstream 100 bases:

>100_bases
ATCAGCGCGATGAATATGCTGATCGGGATTCTGATTGGTTGTAGCATAGTGAGTATTCTGCTGATCTTCTCCGTCGCGCC
CAACAGGTCCGTAGCCGAGC

Downstream 100 bases:

>100_bases
CCACCTGCGTTGATAAATTAACCTTACTCTTACCAGAAATGTCACCGTCTGATTAAAGAACCTTCTGAAATTGAATTTTT
AGCGCGTAAAACCTGTCCAT

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKSLTSLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGKVDIGFTGRESHPRSR
ELISLLPLAIDFEVLFSDLPWVWLQEDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI

Sequences:

>Translated_319_residues
MKKSLTSLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGKVDIGFTGRESHPRSR
ELISLLPLAIDFEVLFSDLPWVWLQEDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI
>Mature_319_residues
MKKSLTSLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGKVDIGFTGRESHPRSR
ELISLLPLAIDFEVLFSDLPWVWLQEDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=314, Percent_Identity=84.7133757961784, Blast_Score=534, Evalue=1e-153,
Organism=Escherichia coli, GI1786820, Length=71, Percent_Identity=45.0704225352113, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36971; Mature: 36971

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLTSLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
GLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QRYPQATIKVRNWDYDSLEAITRGKVDIGFTGRESHPRSRELISLLPLAIDFEVLFSDLP
HHCCCCEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
WVWLQEDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
EEEEECCCHHHHHHHCHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSH
HHEEECCCCCEEEECCHHHHHHHHHHHHCCCEECCCCCCHHHHCCEECCEEEEEECCCCC
NPKIVWLRQAINTLCRRLI
CCCEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSLTSLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
GLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QRYPQATIKVRNWDYDSLEAITRGKVDIGFTGRESHPRSRELISLLPLAIDFEVLFSDLP
HHCCCCEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
WVWLQEDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
EEEEECCCHHHHHHHCHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSH
HHEEECCCCCEEEECCHHHHHHHHHHHHCCCEECCCCCCHHHHCCEECCEEEEEECCCCC
NPKIVWLRQAINTLCRRLI
CCCEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA