| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is ppc [H]
Identifier: 161486595
GI number: 161486595
Start: 3081378
End: 3084011
Strand: Direct
Name: ppc [H]
Synonym: VV3004
Alternate gene names: 161486595
Gene position: 3081378-3084011 (Clockwise)
Preceding gene: 37681187
Following gene: 37681189
Centisome position: 91.86
GC content: 50.3
Gene sequence:
>2634_bases ATGAACGAGAAATACGCCGCGCTCAAGAGTAATGTCAGCATGTTGGGGCACTTATTGGGTAACACCATTCAAGAAGCCCA TGGCGACGAAATCTTAGAGAAGGTGGAGACCATTCGTAAGCTCTCCAAATCTGCCCGCGCAGGCAATCAGGCTGATCGTA ACAACCTGATTGAAGAAATCAAAAGCCTGCCAGATGAGCAACTCACCCCGGTGGCTCGCGCTTTTAACCAATTTCTGAAT TTGACCAACATTGCCGAGCAATACCACACCATCTCTCGCCATTGCGATGCACACGTGTGTGAGCCGGATGCGATCAATAC GCTGTTTGCTAAGCTTGGTCAAAACGGCATCAATAAACTCGATACCGCCCAAGCGATTCGTGAATTGAACATTGAACTGG TGCTGACTGCGCACCCGACGGAAATCACGCGCCGCACCATGATCAATAAACTGGTCAAAATCAACGAATGCCTGTCTAAA TTAGAGCTGAGCGATCTTTCTTACAAAGAGCGCCACAAGACAGAAAAACGCCTCGAGCAACTTATCGCCCAGAGCTGGCA CTCAGACGTGATTCGCAAACAGCGCCCAACACCACTCGATGAAGCGAAGTGGGGGTTTGCCGTAGTGGAAAATTCACTCT GGGAAGCAGTGCCAGACTTTCTACGCGAACTCGATGAAAAGCTCAAAGACTATCTAGACCAAGGCTTGCCAATTGATGCT CGCCCTGTTCACTTCTCATCTTGGATGGGTGGTGACCGAGATGGCAACCCGTTTGTGACCCATACTGTGACACGAGAAGT GTTGCTACTCTCGCGCTGGAAAGCGGCGGATCTTTACCTCAAAGACATCAATGAGTTGATCAGCGAGCTGTCAATGACCA AGTGCAACGACACCGTTCGTCAATTGGCAGGTGAAGATGAACACGAGCCTTATCGTGCCATCCTGAAACAACTGCGCACG CTGCTGAGTGATACCAAAGAGATCCTGGATGCGAAAATTAACGGCCAGAAGCTGGCAGTAAAAGCGCCGCTGCAAAGTGT TGAGCAACTTTGGGATCCTCTTTTCGCTTGTTATCAGTCATTACGCGAATGTGGCATGAGCATGATCGCCGAAGGCTCAC TACTCGATACACTACGTCGTGTCAAAGCGTTTGGTGTGCATCTGGTTCGCTTGGACATTCGCCAAGAAAGTACTCGTCAC GCTGATGTCCTTTCTGAACTGACGCGTTACTTAGGCATTGGTGATTACAATCACTGGAGCGAACAAGACAAAATTGCGTT CTTGACCAATGAGTTGGCATCGAAGCGCCCATTGCTACCGCGTGATTGGCAACCTTCAGAGCCAGTGAAAGAAGTGCTCG ATACGTGCAAAATCATTGCCGCGCAATCTCGTGAAGCGTTTGGTGCTTACGTCATCTCGATGGCCAAGACTGCCTCTGAT GTACTCGCGGTGCATCTACTGCTGCAAGAATCAGGCTGTCCTTATCGCATGGATGTTTGCCCGCTGTTTGAAACGCTCGA CGATCTAAACAACGCCGAAGCGGTGATCAAACAATTGATGAGCATTGACCTCTATCGTGGCTTTATTCAAAACCATCAAA TGGTGATGATCGGTTATTCCGACTCAGCAAAAGACGCGGGCGTAATGGCGGCGGGTTGGGCCCAATACCACGCAATGGAA GCCTTAGTGAACGTTGCTGAACAAGAAGGCATTGAGCTGACCTTATTCCACGGCCGTGGCGGTACCATTGGTCGTGGCGG TGCACCCGCTCATGCAGCGCTGCTCTCTCAACCACCAAAGAGCTTGAAAGGCGGCCTACGCGTCACCGAACAAGGTGAGA TGATTCGCTTCAAACTCGGTTTGCCTGATGTGGCTGTTAACAGCTTCAACATGTACGCCAGTGCGATCCTTGAAGCTAAT TTGCTACCACCACCAGAGCCAAAACAAGAGTGGCGCGATCTGATGGAAGTGCTGTCGCAAGTAAGCTGTGAAGCCTACCG AAGTGTGGTTCGTGGTGAGCCAGACTTTGTCCCTTACTTCCGCCAAGCAACACCTGAGCTGGAATTGGGTAAACTGCCTC TAGGCTCTCGCCCTGCCAAGCGTAACCCAAATGGTGGCGTGGAAAGCCTACGTGCGATTCCTTGGATTTTCTCTTGGAGC CAAAACCGCTTGCTATTGCCTGCGTGGTTAGGTGCTGGTGAAGCGATTCAGTACTCGATTGACAAAGGCCATCAAGCGCT TTTGGAAGAAATGTGCCGTGAATGGCCATTTTTCTCCACGCGTTTGGGCATGCTTGAGATGGTGTACCTCAAGTGTAACA GTGAGATTTCTCGTTACTATGATGAACGTCTCGCCGACAAATCACTGCTACCTCTGGGTGATCGTTTACGTGATCAGCTG CAAAGCGACATCAAAGCCGTGCTTAACGTCGAAAACAACGAGAACTTGATGCAAAGCGATCCTTGGGGTCAAGAGTCTAT TCGACTACGTAATATCTACATCGAACCGTTGAATATGCTTCAAGCAGAACTGCTTTACCGCACTCGCCAAGCTGGCGTGG TATCGGAAGAGCTTGAAGAAGCGTTGATGGTGACCATCGCGGGTATCGCCGCAGGTATGCGTAACACCGGTTAA
Upstream 100 bases:
>100_bases AAACTTAGTCTGCTTTATTTGACTAAATATATTAAATTTCGCTAGATTGGTGGCTTAACAAGGAACAATGGATGTAATTT TTTTACGAGGCAGGATGACA
Downstream 100 bases:
>100_bases GCTCATTGAGACGTAAAAGAGCTGGCGACTTACGCCAGCTCTTTTTGTTTCGGAACCCATCCAATACCACTCCCACTCTT CAATGGCCTCATGCCATTTT
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 877; Mature: 877
Protein sequence:
>877_residues MNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEIKSLPDEQLTPVARAFNQFLN LTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSK LELSDLSYKERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLKDYLDQGLPIDA RPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHEPYRAILKQLRT LLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRH ADVLSELTRYLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEPVKEVLDTCKIIAAQSREAFGAYVISMAKTASD VLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVMAAGWAQYHAME ALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEAN LLPPPEPKQEWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWS QNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSLLPLGDRLRDQL QSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNMLQAELLYRTRQAGVVSEELEEALMVTIAGIAAGMRNTG
Sequences:
>Translated_877_residues MNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEIKSLPDEQLTPVARAFNQFLN LTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSK LELSDLSYKERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLKDYLDQGLPIDA RPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHEPYRAILKQLRT LLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRH ADVLSELTRYLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEPVKEVLDTCKIIAAQSREAFGAYVISMAKTASD VLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVMAAGWAQYHAME ALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEAN LLPPPEPKQEWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWS QNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSLLPLGDRLRDQL QSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNMLQAELLYRTRQAGVVSEELEEALMVTIAGIAAGMRNTG >Mature_877_residues MNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEIKSLPDEQLTPVARAFNQFLN LTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSK LELSDLSYKERHKTEKRLEQLIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLKDYLDQGLPIDA RPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHEPYRAILKQLRT LLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQSLRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRH ADVLSELTRYLGIGDYNHWSEQDKIAFLTNELASKRPLLPRDWQPSEPVKEVLDTCKIIAAQSREAFGAYVISMAKTASD VLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVMAAGWAQYHAME ALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEAN LLPPPEPKQEWRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWS QNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSLLPLGDRLRDQL QSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNMLQAELLYRTRQAGVVSEELEEALMVTIAGIAAGMRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=884, Percent_Identity=63.6877828054299, Blast_Score=1120, Evalue=0.0,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 98928; Mature: 98928
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH KSLPDEQLTPVARAFNQFLNLTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKL HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH DTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSKLELSDLSYKERHKTEKRLEQ HHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLKDYLDQGLPIDA HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVR CCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QLAGEDEHEPYRAILKQLRTLLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHH LRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRHADVLSELTRYLGIGDYNHWS HHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC EQDKIAFLTNELASKRPLLPRDWQPSEPVKEVLDTCKIIAAQSREAFGAYVISMAKTASD CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH VLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYS HHHHHHHHHCCCCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC DSAKDAGVMAAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPK CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCH SLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEANLLPPPEPKQEWRDLMEVLSQ HHHCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH VSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWS HHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEECC QNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYY CCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHH DERLADKSLLPLGDRLRDQLQSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNML HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHH QAELLYRTRQAGVVSEELEEALMVTIAGIAAGMRNTG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNEKYAALKSNVSMLGHLLGNTIQEAHGDEILEKVETIRKLSKSARAGNQADRNNLIEEI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH KSLPDEQLTPVARAFNQFLNLTNIAEQYHTISRHCDAHVCEPDAINTLFAKLGQNGINKL HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH DTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSKLELSDLSYKERHKTEKRLEQ HHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LIAQSWHSDVIRKQRPTPLDEAKWGFAVVENSLWEAVPDFLRELDEKLKDYLDQGLPIDA HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RPVHFSSWMGGDRDGNPFVTHTVTREVLLLSRWKAADLYLKDINELISELSMTKCNDTVR CCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QLAGEDEHEPYRAILKQLRTLLSDTKEILDAKINGQKLAVKAPLQSVEQLWDPLFACYQS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHH LRECGMSMIAEGSLLDTLRRVKAFGVHLVRLDIRQESTRHADVLSELTRYLGIGDYNHWS HHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC EQDKIAFLTNELASKRPLLPRDWQPSEPVKEVLDTCKIIAAQSREAFGAYVISMAKTASD CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH VLAVHLLLQESGCPYRMDVCPLFETLDDLNNAEAVIKQLMSIDLYRGFIQNHQMVMIGYS HHHHHHHHHCCCCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC DSAKDAGVMAAGWAQYHAMEALVNVAEQEGIELTLFHGRGGTIGRGGAPAHAALLSQPPK CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCH SLKGGLRVTEQGEMIRFKLGLPDVAVNSFNMYASAILEANLLPPPEPKQEWRDLMEVLSQ HHHCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH VSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWS HHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEECC QNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYY CCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHH DERLADKSLLPLGDRLRDQLQSDIKAVLNVENNENLMQSDPWGQESIRLRNIYIEPLNML HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHH QAELLYRTRQAGVVSEELEEALMVTIAGIAAGMRNTG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA