| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ilvD1 [H]
Identifier: 161353766
GI number: 161353766
Start: 3298403
End: 3300226
Strand: Reverse
Name: ilvD1 [H]
Synonym: BRADO3103
Alternate gene names: 161353766
Gene position: 3300226-3298403 (Counterclockwise)
Preceding gene: 146340095
Following gene: 146340093
Centisome position: 44.26
GC content: 66.39
Gene sequence:
>1824_bases ATGACAAAATCCAACGGACATGCCGGCAACGACGCTGACAAGAGCCGCAAGCTGCGGTCGCAGGCGTGGTTCAACGATCC GCACAACCCGGGCATGACCGCGCTCTATCTCGAGCGCTATCTGAATTTCGGCCTCACCCGCGCCGAGTTGCAGTCAGGCA AGCCGATCATCGGCATCGCGCAGACCGGAAACGACCTGTCGCCGTGCAACCGCCACCACCTCGAGCTGGCGCATCGCGTG CGCGAGGGCATCCGCGAGGCCGGCGGCATCGCGATGGAGTTTCCGACCCATCCGATCCAGGAGACCGGCAAGCGGCCGAC GGCGGCGCTCGACCGCAACCTTGCTTATCTCGGCCTGGTGGAAATCCTGTTCGGCTATCCGCTCGACGGCGTGGTGCTGA CCACCGGCTGCGACAAGACGACGCCGGCCTGCCTGATGGCGGCGGCTACCGTCAACATTCCCGCCATCGTGCTCTCGGGT GGACCGATGCTGAACGGCTGGCACGAAGGCCAGCGCACCGGCTCCGGCACCGTGGTGTGGAAGTCGCGCGAGCGGCTGGC CGCCGGCGAGATCGACTATGAGGAATTCATGCAGATCGTGGCGTCGTCGGCGCCATCGGTCGGGCATTGCAACACCATGG GCACGGCCTCGACCATGAACGCGCTGGCCGAAGCGCTCGGCATGTCCCTGCCCGGCTGCGCCGCGATCCCTGCGCCCTAC CGCGAGCGCGGCCAGATCGCCTACGAGACCGGCAAGCGCATCGTCGACATGGTGTGGGAGGACCTGAAGCCGTCGGACAT CCTCACCCGCAAGGCGTTCGAGAACTGCATCGTCGCGAACTCCGCGATCGGCGGCTCGACCAATGCGCCGATCCACATCA ATGCGCTGGCGCGCCATGTCGGCGTCGAGCTGAACATCGATGATTGGCAGAAGGTCGGCCACGATGTGCCGCTCTTGGTC AACATGCAGCCGGCCGGCTTCTATCTCGGCGAGGAATTCCATCGCGCCGGCGGCGTGCCGGCGGTGATCGGCGAATTGAT GCGGCACAAGCGCATCCACGAGGACGTCATCACCGCCAACGGCCGCAGCATGGGCGACAATTGCCGCGCCGCGCCGAAGC CCGACAACGACGTGATCTGGTCGTACGACAAGCCGCTGGTGAAGGACGCCGGCTTCCTCGTGCTGCGCGGCAATCTGTTC GATTCCGCGATCATGAAGACCAGCGTGATCTCCAAGGAATTCCGCGACCGCTATCTGAACAACCCGAAGGACCCCAACGC CTTCGAAGGCCGCGCCATCGTGTTCGAGGGTCCGGAGGACTATCACGACCGCATCGACGATCCGGCGCTCACGATCGACG AGCACTGCGTGCTGTTCATCCGCGGCGCCGGCCCGATCGGCTATCCCGGCGGCGCCGAGGTCGTGAACATGCAGCCGCCG GCGGCGCTGATCAAGCGCGGCATCCTGTCCCTGCCCTGCATCGGCGACGGCCGCCAGTCCGGCACCTCGGGCTCGCCGTC GATCCTCAACGCCTCGCCGGAAGCCGCCGCCGACGGCGGGCTCGCGATCCTCAGGGCCGGCGACAAGGTCCGGATCGACC TCAACAAGGGCTCGGCCAACATCCTGATCTCCGACGAGGAGGTTGCGAACCGGCATGCCGAGCTGAAGGCCAAGGGGGGC TTCCCGCACCCGGCCAACCAGACGCCCTGGCAGGAGCTCTATCGCAACACCGTCGGCCAGCAATCCACCGGCGCCTGCAT GGAGCTCGCGACACGGTACCAGAACATCGCTGGCACTGTCGGCGTGGCCAGGCATAACCACTAG
Upstream 100 bases:
>100_bases GGCGGCATCTGACTGCGGCGCCTCATCCCGCGTGATCCCCACGCGGGATGAGACATCCCGATGGGCCGGTGTCGCCACGT TTGCACTGCGGGAGGAACGA
Downstream 100 bases:
>100_bases ACACACGGCACAAAGCCAGCCACCGTCATTGCGACGAGCGAAGCGACGAAGCAATCCAGAGCCGCACACGCAGCCCTGGA TTGCTTCGCTGCGCTCGCAA
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MTKSNGHAGNDADKSRKLRSQAWFNDPHNPGMTALYLERYLNFGLTRAELQSGKPIIGIAQTGNDLSPCNRHHLELAHRV REGIREAGGIAMEFPTHPIQETGKRPTAALDRNLAYLGLVEILFGYPLDGVVLTTGCDKTTPACLMAAATVNIPAIVLSG GPMLNGWHEGQRTGSGTVVWKSRERLAAGEIDYEEFMQIVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPY RERGQIAYETGKRIVDMVWEDLKPSDILTRKAFENCIVANSAIGGSTNAPIHINALARHVGVELNIDDWQKVGHDVPLLV NMQPAGFYLGEEFHRAGGVPAVIGELMRHKRIHEDVITANGRSMGDNCRAAPKPDNDVIWSYDKPLVKDAGFLVLRGNLF DSAIMKTSVISKEFRDRYLNNPKDPNAFEGRAIVFEGPEDYHDRIDDPALTIDEHCVLFIRGAGPIGYPGGAEVVNMQPP AALIKRGILSLPCIGDGRQSGTSGSPSILNASPEAAADGGLAILRAGDKVRIDLNKGSANILISDEEVANRHAELKAKGG FPHPANQTPWQELYRNTVGQQSTGACMELATRYQNIAGTVGVARHNH
Sequences:
>Translated_607_residues MTKSNGHAGNDADKSRKLRSQAWFNDPHNPGMTALYLERYLNFGLTRAELQSGKPIIGIAQTGNDLSPCNRHHLELAHRV REGIREAGGIAMEFPTHPIQETGKRPTAALDRNLAYLGLVEILFGYPLDGVVLTTGCDKTTPACLMAAATVNIPAIVLSG GPMLNGWHEGQRTGSGTVVWKSRERLAAGEIDYEEFMQIVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPY RERGQIAYETGKRIVDMVWEDLKPSDILTRKAFENCIVANSAIGGSTNAPIHINALARHVGVELNIDDWQKVGHDVPLLV NMQPAGFYLGEEFHRAGGVPAVIGELMRHKRIHEDVITANGRSMGDNCRAAPKPDNDVIWSYDKPLVKDAGFLVLRGNLF DSAIMKTSVISKEFRDRYLNNPKDPNAFEGRAIVFEGPEDYHDRIDDPALTIDEHCVLFIRGAGPIGYPGGAEVVNMQPP AALIKRGILSLPCIGDGRQSGTSGSPSILNASPEAAADGGLAILRAGDKVRIDLNKGSANILISDEEVANRHAELKAKGG FPHPANQTPWQELYRNTVGQQSTGACMELATRYQNIAGTVGVARHNH >Mature_606_residues TKSNGHAGNDADKSRKLRSQAWFNDPHNPGMTALYLERYLNFGLTRAELQSGKPIIGIAQTGNDLSPCNRHHLELAHRVR EGIREAGGIAMEFPTHPIQETGKRPTAALDRNLAYLGLVEILFGYPLDGVVLTTGCDKTTPACLMAAATVNIPAIVLSGG PMLNGWHEGQRTGSGTVVWKSRERLAAGEIDYEEFMQIVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPYR ERGQIAYETGKRIVDMVWEDLKPSDILTRKAFENCIVANSAIGGSTNAPIHINALARHVGVELNIDDWQKVGHDVPLLVN MQPAGFYLGEEFHRAGGVPAVIGELMRHKRIHEDVITANGRSMGDNCRAAPKPDNDVIWSYDKPLVKDAGFLVLRGNLFD SAIMKTSVISKEFRDRYLNNPKDPNAFEGRAIVFEGPEDYHDRIDDPALTIDEHCVLFIRGAGPIGYPGGAEVVNMQPPA ALIKRGILSLPCIGDGRQSGTSGSPSILNASPEAAADGGLAILRAGDKVRIDLNKGSANILISDEEVANRHAELKAKGGF PHPANQTPWQELYRNTVGQQSTGACMELATRYQNIAGTVGVARHNH
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=569, Percent_Identity=30.2284710017575, Blast_Score=205, Evalue=7e-54, Organism=Escherichia coli, GI1788157, Length=456, Percent_Identity=30.4824561403509, Blast_Score=183, Evalue=3e-47, Organism=Escherichia coli, GI2367371, Length=500, Percent_Identity=27.2, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1786464, Length=441, Percent_Identity=28.1179138321995, Blast_Score=114, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6322476, Length=552, Percent_Identity=28.804347826087, Blast_Score=211, Evalue=3e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 65455; Mature: 65324
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSNGHAGNDADKSRKLRSQAWFNDPHNPGMTALYLERYLNFGLTRAELQSGKPIIGIA CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCEEEEE QTGNDLSPCNRHHLELAHRVREGIREAGGIAMEFPTHPIQETGKRPTAALDRNLAYLGLV CCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCCCCHHHHCCHHHHHHH EILFGYPLDGVVLTTGCDKTTPACLMAAATVNIPAIVLSGGPMLNGWHEGQRTGSGTVVW HHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEE KSRERLAAGEIDYEEFMQIVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPY CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC RERGQIAYETGKRIVDMVWEDLKPSDILTRKAFENCIVANSAIGGSTNAPIHINALARHV HHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEHHHHH GVELNIDDWQKVGHDVPLLVNMQPAGFYLGEEFHRAGGVPAVIGELMRHKRIHEDVITAN CCEECCHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC GRSMGDNCRAAPKPDNDVIWSYDKPLVKDAGFLVLRGNLFDSAIMKTSVISKEFRDRYLN CCCCCCCCCCCCCCCCCEEEECCCCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC NPKDPNAFEGRAIVFEGPEDYHDRIDDPALTIDEHCVLFIRGAGPIGYPGGAEVVNMQPP CCCCCCCCCCCEEEECCCHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCCCCEEECCCC AALIKRGILSLPCIGDGRQSGTSGSPSILNASPEAAADGGLAILRAGDKVRIDLNKGSAN HHHHHCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCEEEEEEECCCEE ILISDEEVANRHAELKAKGGFPHPANQTPWQELYRNTVGQQSTGACMELATRYQNIAGTV EEECCHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC GVARHNH CCCCCCC >Mature Secondary Structure TKSNGHAGNDADKSRKLRSQAWFNDPHNPGMTALYLERYLNFGLTRAELQSGKPIIGIA CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCEEEEE QTGNDLSPCNRHHLELAHRVREGIREAGGIAMEFPTHPIQETGKRPTAALDRNLAYLGLV CCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCCCCCHHHHCCHHHHHHH EILFGYPLDGVVLTTGCDKTTPACLMAAATVNIPAIVLSGGPMLNGWHEGQRTGSGTVVW HHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEE KSRERLAAGEIDYEEFMQIVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPY CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC RERGQIAYETGKRIVDMVWEDLKPSDILTRKAFENCIVANSAIGGSTNAPIHINALARHV HHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEHHHHH GVELNIDDWQKVGHDVPLLVNMQPAGFYLGEEFHRAGGVPAVIGELMRHKRIHEDVITAN CCEECCHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC GRSMGDNCRAAPKPDNDVIWSYDKPLVKDAGFLVLRGNLFDSAIMKTSVISKEFRDRYLN CCCCCCCCCCCCCCCCCEEEECCCCHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC NPKDPNAFEGRAIVFEGPEDYHDRIDDPALTIDEHCVLFIRGAGPIGYPGGAEVVNMQPP CCCCCCCCCCCEEEECCCHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCCCCEEECCCC AALIKRGILSLPCIGDGRQSGTSGSPSILNASPEAAADGGLAILRAGDKVRIDLNKGSAN HHHHHCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCEEEEEEECCCEE ILISDEEVANRHAELKAKGGFPHPANQTPWQELYRNTVGQQSTGACMELATRYQNIAGTV EEECCHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC GVARHNH CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA