Click here to switch to the map view.

The map label for this gene is secB

Identifier: 16127972

GI number: 16127972

Start: 3995731

End: 3996222

Strand: Direct

Name: secB

Synonym: CC_3742

Alternate gene names: 16127972

Gene position: 3995731-3996222 (Clockwise)

Preceding gene: 16127968

Following gene: 16127974

Centisome position: 99.47

GC content: 67.89

Gene sequence:

>492_bases
ATGACCGACACCATCGCCCCCGAGGCGACCCCGGAAGGCGCCGAGGCCGGCCAAGCGGGCATCCGCATCCTGGCCCAGTT
CGTCCGCGATTTCTCGTTCGAGAATCCGCTGGCTCCCGACGCGCTGCGCGCGGGCGCCGCCCAACCCGCCATCGACATGG
GCGTGGAAATGAACGCCCGGGGCCGCGCTGACGGTCTGTTCGAAGTGGACCTGAAGCTGTCGGCGCGCGCCGAGCGCGAA
GGCCAGGCCGTGTTCCACGTCGAAGTGGTCTATGGCGGCCTCTTCCACATCGCCGGCATTGCCGAAGAGGATCTGGAGCC
CGTTCTGCTGATCGAGTGCCCGCGCTTCCTGTTCCCCTACGCTCGTCGCCTGATTTCGGACGTGACGGCGGAAGGTGGTT
TCCCGCCGTTCCTGATCGATCCGATCGACTTCGCGGGCGTCTACGCCGCGCGCAAGGCCCAGGCCGAAGGCCAGCAGGTC
GGCAACGCGTAA

Upstream 100 bases:

>100_bases
TCGCCCGTCAGGCGCCTGGCGTTGCGCCAGATCAGCCCTCATGGTAGCAGCGCCCACCTTTCTTTTGGCGTTCTAGCCGC
CGATTACGGATTTTATCCTA

Downstream 100 bases:

>100_bases
GTGACGCGGAGACGCTGAAACGAAAGAGGCCCGGTCATCGCTGACCGGGCCTTTTTGTTGATCAGGGCTGCAGCCGATAG
CCGCCCATCTCGGTGATCAA

Product: protein-export protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTDTIAPEATPEGAEAGQAGIRILAQFVRDFSFENPLAPDALRAGAAQPAIDMGVEMNARGRADGLFEVDLKLSARAERE
GQAVFHVEVVYGGLFHIAGIAEEDLEPVLLIECPRFLFPYARRLISDVTAEGGFPPFLIDPIDFAGVYAARKAQAEGQQV
GNA

Sequences:

>Translated_163_residues
MTDTIAPEATPEGAEAGQAGIRILAQFVRDFSFENPLAPDALRAGAAQPAIDMGVEMNARGRADGLFEVDLKLSARAERE
GQAVFHVEVVYGGLFHIAGIAEEDLEPVLLIECPRFLFPYARRLISDVTAEGGFPPFLIDPIDFAGVYAARKAQAEGQQV
GNA
>Mature_162_residues
TDTIAPEATPEGAEAGQAGIRILAQFVRDFSFENPLAPDALRAGAAQPAIDMGVEMNARGRADGLFEVDLKLSARAEREG
QAVFHVEVVYGGLFHIAGIAEEDLEPVLLIECPRFLFPYARRLISDVTAEGGFPPFLIDPIDFAGVYAARKAQAEGQQVG
NA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=132, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_CAUCN (B8GW20)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002519231.1
- ProteinModelPortal:   B8GW20
- SMR:   B8GW20
- GeneID:   7332706
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_03858
- OMA:   GFPPLMI
- ProtClustDB:   CLSK891684
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17458; Mature: 17327

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTIAPEATPEGAEAGQAGIRILAQFVRDFSFENPLAPDALRAGAAQPAIDMGVEMNAR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCCCCCC
GRADGLFEVDLKLSARAEREGQAVFHVEVVYGGLFHIAGIAEEDLEPVLLIECPRFLFPY
CCCCCEEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
ARRLISDVTAEGGFPPFLIDPIDFAGVYAARKAQAEGQQVGNA
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDTIAPEATPEGAEAGQAGIRILAQFVRDFSFENPLAPDALRAGAAQPAIDMGVEMNAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCCCCCC
GRADGLFEVDLKLSARAEREGQAVFHVEVVYGGLFHIAGIAEEDLEPVLLIECPRFLFPY
CCCCCEEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
ARRLISDVTAEGGFPPFLIDPIDFAGVYAARKAQAEGQQVGNA
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA