Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 16127834

GI number: 16127834

Start: 3857039

End: 3857998

Strand: Direct

Name: ybjT [H]

Synonym: CC_3604

Alternate gene names: 16127834

Gene position: 3857039-3857998 (Clockwise)

Preceding gene: 16127823

Following gene: 16127836

Centisome position: 96.02

GC content: 70.1

Gene sequence:

>960_bases
ATGCAAGGTCTGGTCACGGTGTTCGGCGGCTCCGGTTTCGTGGGCGGTCAGGTCGTGCGGGCGCTCGCCAAGGCGGGCCA
TCGCGTGCGGGTGGCCGTGCGCCAGCCCAATCTCGCCTACAAGATGCGCATGCTGGGCGATGTCGGCCAGATCGAGGTCG
TGCAGGCCAATGTCCGCAATCCGAGCTCGGTGGCCCGCGCGCTGGACGGCGCCGAGGGCTGCGTGAACCTGGTGGGCGTG
CTCTTCGAGAGCGGTCGCCAGAAGTTCCTGTCGGTCCACACCATGGGCGCGCGTAACGTCGCCGAGGCCGCCGCCAAGGC
CGGCGTCAAGCATCTGGTCCATGTCAGCGCCATCGGCGCCGACGTGAACAGCCCCGCCAAGTACGCCCGCTCCAAGGGCG
AGGGCGAGGCCGCCGTGCGCGAAGCCTTCCCCGGCGCCACCATTGTACGCCCCTCGATCGTATTCGGTCCCGAGGACGAC
TTCTTCAACCGCTTCGCCCAGATGGCCGCCCTGGCCCCCGCCCTGCCGCTGGTCGGCGGCGACACGCGCTTCCAGCCGGT
GTTCGTCGGCGATGTGGCCGCGGTGATCGCCAAGGCGGTCGCCAGCCCGGCTGCGGCGGGCGTGACCTACGAACTGGGCG
GCCCGACCGTCTACACGATGCGCGAGATCCTCGAGCTGATCCTGGTGGAGACCGGCCGTAACCGGCCGCTGATCCCCCTG
CCCTGGCCGGTGGCCTCGCTGATCGGCTCGCTGGGCGACCTCGTCGCAGGCGTCATCCCGCCGCCGCTGACCAGCGATCA
GGTCCAGATGCTCAAGAGCGACAATGTCGCCGAACAGGGCCTGCCCGGCCTGGCTGAAGCCGGCGTGACGCCGACGGCCG
TTGAAGCCATCGTGCCGAGCTACCTCTATCGCTACCGCAAGGGCGGTCAGTACGCCGAGACCCCGGCCGGCGCGTTCTAG

Upstream 100 bases:

>100_bases
GCGAAAAAACGACAAATCGTGATTTCGTTGCGAACCGGGCCGTGGTCGTCTAATTCCCCCGTTCATCGCGGTGTGGTCAT
CGCAGGCACGAGGGATGATG

Downstream 100 bases:

>100_bases
AGCCCTTTAGCTTTAGATGGAATCATCTAAAGCGTTAGAAAGGGCTCTAAGTGTTTGACTTTAGAGCCTGTTTATCTGGT
TTAGATGGTTCCATCTAAAC

Product: NADH-ubiquinone oxidoreductase 39 kDa subunit precursor

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MQGLVTVFGGSGFVGGQVVRALAKAGHRVRVAVRQPNLAYKMRMLGDVGQIEVVQANVRNPSSVARALDGAEGCVNLVGV
LFESGRQKFLSVHTMGARNVAEAAAKAGVKHLVHVSAIGADVNSPAKYARSKGEGEAAVREAFPGATIVRPSIVFGPEDD
FFNRFAQMAALAPALPLVGGDTRFQPVFVGDVAAVIAKAVASPAAAGVTYELGGPTVYTMREILELILVETGRNRPLIPL
PWPVASLIGSLGDLVAGVIPPPLTSDQVQMLKSDNVAEQGLPGLAEAGVTPTAVEAIVPSYLYRYRKGGQYAETPAGAF

Sequences:

>Translated_319_residues
MQGLVTVFGGSGFVGGQVVRALAKAGHRVRVAVRQPNLAYKMRMLGDVGQIEVVQANVRNPSSVARALDGAEGCVNLVGV
LFESGRQKFLSVHTMGARNVAEAAAKAGVKHLVHVSAIGADVNSPAKYARSKGEGEAAVREAFPGATIVRPSIVFGPEDD
FFNRFAQMAALAPALPLVGGDTRFQPVFVGDVAAVIAKAVASPAAAGVTYELGGPTVYTMREILELILVETGRNRPLIPL
PWPVASLIGSLGDLVAGVIPPPLTSDQVQMLKSDNVAEQGLPGLAEAGVTPTAVEAIVPSYLYRYRKGGQYAETPAGAF
>Mature_319_residues
MQGLVTVFGGSGFVGGQVVRALAKAGHRVRVAVRQPNLAYKMRMLGDVGQIEVVQANVRNPSSVARALDGAEGCVNLVGV
LFESGRQKFLSVHTMGARNVAEAAAKAGVKHLVHVSAIGADVNSPAKYARSKGEGEAAVREAFPGATIVRPSIVFGPEDD
FFNRFAQMAALAPALPLVGGDTRFQPVFVGDVAAVIAKAVASPAAAGVTYELGGPTVYTMREILELILVETGRNRPLIPL
PWPVASLIGSLGDLVAGVIPPPLTSDQVQMLKSDNVAEQGLPGLAEAGVTPTAVEAIVPSYLYRYRKGGQYAETPAGAF

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=304, Percent_Identity=32.5657894736842, Blast_Score=158, Evalue=7e-39,
Organism=Escherichia coli, GI87081793, Length=299, Percent_Identity=23.7458193979933, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17556106, Length=237, Percent_Identity=35.4430379746835, Blast_Score=147, Evalue=7e-36,
Organism=Drosophila melanogaster, GI24667554, Length=337, Percent_Identity=32.6409495548961, Blast_Score=154, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 33207; Mature: 33207

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLVTVFGGSGFVGGQVVRALAKAGHRVRVAVRQPNLAYKMRMLGDVGQIEVVQANVRN
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEEEECCCC
PSSVARALDGAEGCVNLVGVLFESGRQKFLSVHTMGARNVAEAAAKAGVKHLVHVSAIGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
DVNSPAKYARSKGEGEAAVREAFPGATIVRPSIVFGPEDDFFNRFAQMAALAPALPLVGG
CCCCHHHHHHCCCCCHHHHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHHHHCCCCCCC
DTRFQPVFVGDVAAVIAKAVASPAAAGVTYELGGPTVYTMREILELILVETGRNRPLIPL
CCCCCCEEHHHHHHHHHHHHHCCHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEC
PWPVASLIGSLGDLVAGVIPPPLTSDQVQMLKSDNVAEQGLPGLAEAGVTPTAVEAIVPS
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHH
YLYRYRKGGQYAETPAGAF
HHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQGLVTVFGGSGFVGGQVVRALAKAGHRVRVAVRQPNLAYKMRMLGDVGQIEVVQANVRN
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEEEECCCC
PSSVARALDGAEGCVNLVGVLFESGRQKFLSVHTMGARNVAEAAAKAGVKHLVHVSAIGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
DVNSPAKYARSKGEGEAAVREAFPGATIVRPSIVFGPEDDFFNRFAQMAALAPALPLVGG
CCCCHHHHHHCCCCCHHHHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHHHHCCCCCCC
DTRFQPVFVGDVAAVIAKAVASPAAAGVTYELGGPTVYTMREILELILVETGRNRPLIPL
CCCCCCEEHHHHHHHHHHHHHCCHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEC
PWPVASLIGSLGDLVAGVIPPPLTSDQVQMLKSDNVAEQGLPGLAEAGVTPTAVEAIVPS
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHH
YLYRYRKGGQYAETPAGAF
HHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]