Click here to switch to the map view.

The map label for this gene is yncD [H]

Identifier: 16127730

GI number: 16127730

Start: 3742657

End: 3744795

Strand: Direct

Name: yncD [H]

Synonym: CC_3500

Alternate gene names: 16127730

Gene position: 3742657-3744795 (Clockwise)

Preceding gene: 16127729

Following gene: 16127731

Centisome position: 93.17

GC content: 67.74

Gene sequence:

>2139_bases
GTGAACGCGCGCGCCCTCCCCGGCGCGCCCTGGATCATTCACGGCCGCCGCCTGGCGGCCGAAGGACGCTGTATTTCCAT
GAAGTCTCTTCTGCTGGCCACCACGGCCGCCCTGGCCTTTGCGCCCGCCGCCCTGGCCTCGACCGCCTTTGCGGCCGACA
CCACCGCCGACGCGACGCAAGTCTCGTCGGTCATCGTCACCGCCCGTCCCAATCCGGAAGACCCACCGGTCGTCGCCGAC
GCCCGCAAGCGCCTGTCGGAAACCCCCGGCGCGGTGTCGGTGATCTCTCAGGAATCCTACATCAACCGCCAGACCCTGGC
GCTCGACGACATGCTGCGCGACGCGCCGGGCGTCTACGCCCAGCGCAAGTGGGGCGGCGACATCCGCGTGTCGATCCGGG
GTTCGGGCATCGGCAACGCCAATCACAACCGGGGCCTCCTGATCGCCCAGGACGGCGTGCCGCTGAACGAGGCCGACGGC
TTTGGCGACACCCAGATCGCCGATCCGCTGAACACCCGCTACGCCGAGGTCTATCGCGGCGGCAACGCCCTGCGCTTCGG
CGGCGCCCTGTTGGGCGGGGCGATCAACATGGTCACGCCCACCGGCAAGGACGCCGGCTTCCAGAACCGCATCCGCCTGG
ACGGCGGCTCGTACGGCCTGGCCCGTCAGCACGTGGCCCTGGCGCGCCAGAGCGGCGACTGGGACGTCTTCGTCGCCGCC
ACCAACCAGACCAGCCAGGGCTGGCGCTCGCAAAGCCAGCAGAACATCCAGTTCGGCTCGCTGAACATCGGCCGCTCGTT
CGGCGAGGACCGCGAGGTGCGGTTCATCGTCAATGGCTCGAACATCAACCAGGAAATCCCCGGTTCGCTGACCCTGGCGC
AGTTCAACGCCAATCCCCGCCAATCGTCCGCCGGCAACCTGGCCAATGACAACGGCCGCAACCAGCGCGGCGTGCGCGGC
TCGCTGCGCACCACCTGGCGTCTGGACGACAGCCTCGTGTTCGAAGGCGCGGTCTATGCGGTGTGGAAGGACCTGGATCA
CCCGATCTTCCAGGTCATCGACCAGCAGAGCCGCAACTACGGCGCCTTTGGTCGCTTCGACTGGGACGGCGAGATCGGCG
GCAAGCGCGCCGACGCCTTCTTCGGCGCCTGGTACCGCTCGGGTGATCTGGACTCCAACTTCTACGTCAACAACCGCGGC
GGCCGCGGCGCGCCGACCTCGCGCACGCTGCAAAACGCCGAGGCGATCGACGTGTTCGGCGAAGGCCGCGTGTTCGTGAC
CGATCAGGTCGCGATCGTGGCCGGCGCCACCTGGGGCCAGGCCAAGCGCGACTATCAAAGCTTCGCCATCCCCGGCGTCG
CCTCGACCTTCAACCTGAAGGCCGACAAGACCTATGACTGGGTCTCCCCGCGCATCGGCCTGCTCTGGCAAGGCGAAGGC
GGCGACCAGGTGTTCGCCAACCTGACCCGCTCGGTCGAACCGCCGAACTTCGGCTCGATGTCGCCGACCAATATCGGCTT
TGCGCCGGTGCGGTCGCAGAAGGCCTGGACGGGCGAGGTCGGCGCGCGCGGCCATCGCGGTCCGTTCACCTACGACGTGA
CCCTGTACCGCGCCGAGCTGAAGGGCGAGATGCTGCAGTACACGGTTAATCCGTCGATCCCGGCCTCGACCTTCAACGCC
GACAAGACCCTGCACCAGGGGATCGAGGCGGCCCTGGACTGGGCGGTGGCGCCGCAGTGGCGGATCCGTCAGACCTGGAC
CTATTCGGACTTCCGCTTCAAGGACGACGTCCAGTACGGCGACAATCGCCTGCCGATCGTGCCCAAGACCTTCTACCGCT
CGGAAGTCCGCTATGACGATCCGCGCGGCTGGTTCCTGGCCCCGTCGGTCGAGTGGTCGGCCAGCGATCAGTGGATCGAC
TACAGGAACACGAAAAAGGCCCCCGGCTACGCGATCCTCAACCTGAACGCCGGCTGGAAGGTCAATGACACCGTCTCGCT
GTTCCTCGACGCGCGGAACCTGACCGACAAGGCCTATGTCTCCAACACCGGGGCTGCGACCACCTGGACGGCGGCCAGCG
CCGTGCTGTGGCCGGGCGATGGCCGCTCGGTGTTCGGCGGCGTGACCGTCAGCTTCTAA

Upstream 100 bases:

>100_bases
GCCCGCACGCTTGCGCCGGGCCGGGGCCTGGCCGCGCCGCCTCCGCCGGCCACAGGCCCGCCCCTCGTCCTGATCTGAGC
CTCGATCCTCACGATCGAGC

Downstream 100 bases:

>100_bases
CCCCTAAAAGTCTGGTCCTGACGGGGCGGCGGGTCGCAAGCGCCGCCGCCCCAAACCCGGAGCATCGCGATGACCGCGAT
CGACAATTCCGAGACCCCCG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 712

Protein sequence:

>712_residues
MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQVSSVIVTARPNPEDPPVVAD
ARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYAQRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADG
FGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA
TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLANDNGRNQRGVRG
SLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRG
GRGAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG
GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNA
DKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYGDNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWID
YRNTKKAPGYAILNLNAGWKVNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF

Sequences:

>Translated_712_residues
MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQVSSVIVTARPNPEDPPVVAD
ARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYAQRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADG
FGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA
TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLANDNGRNQRGVRG
SLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRG
GRGAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG
GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNA
DKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYGDNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWID
YRNTKKAPGYAILNLNAGWKVNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF
>Mature_712_residues
MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQVSSVIVTARPNPEDPPVVAD
ARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYAQRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADG
FGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA
TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLANDNGRNQRGVRG
SLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRG
GRGAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG
GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNA
DKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYGDNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWID
YRNTKKAPGYAILNLNAGWKVNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=685, Percent_Identity=25.5474452554745, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77689; Mature: 77689

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQ
CCCCCCCCCCEEEECCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE
VSSVIVTARPNPEDPPVVADARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYA
EEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHCCCCCEE
QRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADGFGDTQIADPLNTRYAEVYRG
EEECCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
GNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA
CCEEEECCEECCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE
TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPR
CCCCCHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC
QSSAGNLANDNGRNQRGVRGSLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNY
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCEEEEEHHHCCCHHHHHHHHCCCCC
GAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRGGRGAPTSRTLQNAEAIDVFG
CCCEEECCCCCCCCCCHHHHEEHEEECCCCCCCEEEECCCCCCCCCHHHHCCCCEEEEEC
EGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG
CCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC
GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAEL
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
KGEMLQYTVNPSIPASTFNADKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYG
CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEECCCCCCC
DNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWIDYRNTKKAPGYAILNLNAGWK
CCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCEEEEECCCCCE
VNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF
ECCEEEEEEECCCCCCCCEECCCCCCEEEECCEEEEECCCCCEEECCEEEEC
>Mature Secondary Structure
MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQ
CCCCCCCCCCEEEECCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE
VSSVIVTARPNPEDPPVVADARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYA
EEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHCCCCCEE
QRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADGFGDTQIADPLNTRYAEVYRG
EEECCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
GNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA
CCEEEECCEECCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE
TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPR
CCCCCHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC
QSSAGNLANDNGRNQRGVRGSLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNY
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCEEEEEHHHCCCHHHHHHHHCCCCC
GAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRGGRGAPTSRTLQNAEAIDVFG
CCCEEECCCCCCCCCCHHHHEEHEEECCCCCCCEEEECCCCCCCCCHHHHCCCCEEEEEC
EGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG
CCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC
GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAEL
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC
KGEMLQYTVNPSIPASTFNADKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYG
CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEECCCCCCC
DNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWIDYRNTKKAPGYAILNLNAGWK
CCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCEEEEECCCCCE
VNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF
ECCEEEEEEECCCCCCCCEECCCCCCEEEECCEEEEECCCCCEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]