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The map label for this gene is cycM [H]

Identifier: 16127165

GI number: 16127165

Start: 3158871

End: 3159557

Strand: Direct

Name: cycM [H]

Synonym: CC_2935

Alternate gene names: 16127165

Gene position: 3158871-3159557 (Clockwise)

Preceding gene: 16127162

Following gene: 16127168

Centisome position: 78.64

GC content: 70.31

Gene sequence:

>687_bases
ATGAGCGACCTGACGTTCAACAAGATCGCTGGCGGCGTGCTGCTGACCGGCCTCGTTATTTTCGGTCTGCGGGAAGCGTC
CTCGATCGTCTTCTCCAAGCCCGAAGTCGAGAAGGCCGGCTACGAGATCGCGGTCCAGGAAGAAAGCGCCGGCGGCGCGG
CGGTGGTCGAGAGCCTCCCCGACTGGAACGCCGTGCTGACGCCGGCCAATGTGGCCGCCGGCCAGGCTGTCGCGGCCAAG
TGCGCCGCCTGCCACAAGTTCGACGCCTCCAACGCCAACGGCACGGGCCCCGGCCTGTGGGACGTGGTCGGCCGCAAGCC
GGCGGCGCACGCGGACTTCAACTACTCGACCGGCATGAAGGAATTCGCGGCCAAGACCCCGGTCTGGGACTACGACCACC
TGTATGAATTCCTGAAGGCGCCGGGCAAGTATGTCTCGGGCACGAACATGACGTTCGTGGGCCTGAAGAAGCAGGAAGAC
CGCATCGCGATGATCGCCTACATGCACAGCCTGGGTTCGAAGCTGCCGGTCCCGCCGCCGCGTCCGGTCGCCGCCCCGGC
TCCGGCCGAAGGCGCGGCGCCCGCCGCTGAAGGCGCGGCTCCGGCCGCCGAAGGCGCCGCCCCGGCGGCTGCTGGCGCTG
CTCCGGCCGCCCCGGCCGCCGCCGCCCCGGCCGCCCCGAAGGCCTAA

Upstream 100 bases:

>100_bases
AGCGCAACATGACGCGCGCTGGAGACTCGTCCTTGTGATTCCGGCGCGCGGGTTCCAAGCCCGCCGTTCGACGGGCCGAT
AAGAGGCTGACAAGGCTGAA

Downstream 100 bases:

>100_bases
GCGCTCTTCGACATCCGCTACAACGAGGCCGCGACGCGAAAGCGCCGCGGCCTTTTTGTTTGCGTGAAGCGCCTCCTCCG
TCACGTCGCCTATCGGCGCC

Product: cytochrome c, membrane-bound

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSDLTFNKIAGGVLLTGLVIFGLREASSIVFSKPEVEKAGYEIAVQEESAGGAAVVESLPDWNAVLTPANVAAGQAVAAK
CAACHKFDASNANGTGPGLWDVVGRKPAAHADFNYSTGMKEFAAKTPVWDYDHLYEFLKAPGKYVSGTNMTFVGLKKQED
RIAMIAYMHSLGSKLPVPPPRPVAAPAPAEGAAPAAEGAAPAAEGAAPAAAGAAPAAPAAAAPAAPKA

Sequences:

>Translated_228_residues
MSDLTFNKIAGGVLLTGLVIFGLREASSIVFSKPEVEKAGYEIAVQEESAGGAAVVESLPDWNAVLTPANVAAGQAVAAK
CAACHKFDASNANGTGPGLWDVVGRKPAAHADFNYSTGMKEFAAKTPVWDYDHLYEFLKAPGKYVSGTNMTFVGLKKQED
RIAMIAYMHSLGSKLPVPPPRPVAAPAPAEGAAPAAEGAAPAAEGAAPAAAGAAPAAPAAAAPAAPKA
>Mature_227_residues
SDLTFNKIAGGVLLTGLVIFGLREASSIVFSKPEVEKAGYEIAVQEESAGGAAVVESLPDWNAVLTPANVAAGQAVAAKC
AACHKFDASNANGTGPGLWDVVGRKPAAHADFNYSTGMKEFAAKTPVWDYDHLYEFLKAPGKYVSGTNMTFVGLKKQEDR
IAMIAYMHSLGSKLPVPPPRPVAAPAPAEGAAPAAEGAAPAAEGAAPAAAGAAPAAPAAAAPAAPKA

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=101, Percent_Identity=36.6336633663366, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17539604, Length=89, Percent_Identity=41.5730337078652, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17566554, Length=107, Percent_Identity=34.5794392523364, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320796, Length=90, Percent_Identity=35.5555555555556, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322508, Length=90, Percent_Identity=32.2222222222222, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17137228, Length=102, Percent_Identity=39.2156862745098, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17137204, Length=91, Percent_Identity=40.6593406593407, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 23023; Mature: 22892

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLTFNKIAGGVLLTGLVIFGLREASSIVFSKPEVEKAGYEIAVQEESAGGAAVVESLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCEEEEEECCCCCHHHHHCCC
DWNAVLTPANVAAGQAVAAKCAACHKFDASNANGTGPGLWDVVGRKPAAHADFNYSTGMK
CCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHH
EFAAKTPVWDYDHLYEFLKAPGKYVSGTNMTFVGLKKQEDRIAMIAYMHSLGSKLPVPPP
HHHHCCCCCCHHHHHHHHHCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
RPVAAPAPAEGAAPAAEGAAPAAEGAAPAAAGAAPAAPAAAAPAAPKA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDLTFNKIAGGVLLTGLVIFGLREASSIVFSKPEVEKAGYEIAVQEESAGGAAVVESLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCEEEEEECCCCCHHHHHCCC
DWNAVLTPANVAAGQAVAAKCAACHKFDASNANGTGPGLWDVVGRKPAAHADFNYSTGMK
CCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHH
EFAAKTPVWDYDHLYEFLKAPGKYVSGTNMTFVGLKKQEDRIAMIAYMHSLGSKLPVPPP
HHHHCCCCCCHHHHHHHHHCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
RPVAAPAPAEGAAPAAEGAAPAAEGAAPAAAGAAPAAPAAAAPAAPKA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]