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The map label for this gene is rutC

Identifier: 16127028

GI number: 16127028

Start: 3008618

End: 3009007

Strand: Direct

Name: rutC

Synonym: CC_2796

Alternate gene names: 16127028

Gene position: 3008618-3009007 (Clockwise)

Preceding gene: 16127027

Following gene: 16127029

Centisome position: 74.9

GC content: 65.9

Gene sequence:

>390_bases
ATGCCCAAGACCGTCATCACCCCGCCCGGGACCCAGACGCCCATCGCCCCGTTCTCGCCCGGCACGCTGGCCGACGGGAT
CGTCTACGTCTCGGGCACCCTGGCCTTCGACAAGGACAACAACGTCGCCTTCCCCGGCGACGCCGAGGCCCAGACCCGCC
AGGTGCTGGAGACCATCAAGTCGGTGATCGAGACCGCCGGCGGCACGATGGAGGACGTGACCATGAACCACATCTTCCTG
ACCGACTGGGTCCACTACGCCCCGATGAACAAGGTCTATGCCGAGTACTTCCCCGGCGACAAACCGGCCCGCTACTGCAT
CCAGTGCGGCCTGGTGAAGCCGGGCTTCGTGGTCGAGATCGCGTCCGTGGCGCATATCGGCAAGACGTGA

Upstream 100 bases:

>100_bases
AGGAAGACTGAGCAAGCCGTACTGAACACCTCATCCTGAGGCGCCCGCTCCTAAGCGGGCCTCGAAGGACGCAGGGCCTA
AACCAACAAGGGAGACCCCC

Downstream 100 bases:

>100_bases
TGACCTCCCCTCCCGCGCGCCTGCGAAAGCGGGGCGGCCAGCGCCATCTCCCCTTTCAACCGTCATTCCCGCCCTTGTGG
CGGGAACCCCTCTGTCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MPKTVITPPGTQTPIAPFSPGTLADGIVYVSGTLAFDKDNNVAFPGDAEAQTRQVLETIKSVIETAGGTMEDVTMNHIFL
TDWVHYAPMNKVYAEYFPGDKPARYCIQCGLVKPGFVVEIASVAHIGKT

Sequences:

>Translated_129_residues
MPKTVITPPGTQTPIAPFSPGTLADGIVYVSGTLAFDKDNNVAFPGDAEAQTRQVLETIKSVIETAGGTMEDVTMNHIFL
TDWVHYAPMNKVYAEYFPGDKPARYCIQCGLVKPGFVVEIASVAHIGKT
>Mature_128_residues
PKTVITPPGTQTPIAPFSPGTLADGIVYVSGTLAFDKDNNVAFPGDAEAQTRQVLETIKSVIETAGGTMEDVTMNHIFLT
DWVHYAPMNKVYAEYFPGDKPARYCIQCGLVKPGFVVEIASVAHIGKT

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=127, Percent_Identity=25.9842519685039, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=71.09375, Blast_Score=199, Evalue=6e-53,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=32, Blast_Score=67, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=107, Percent_Identity=29.9065420560748, Blast_Score=64, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=33.6, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTC_CAUCN (B8H1Q2)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002518259.1
- ProteinModelPortal:   B8H1Q2
- SMR:   B8H1Q2
- GeneID:   7331316
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_02886
- ProtClustDB:   CLSK879923
- HAMAP:   MF_00831
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR03610

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 13889; Mature: 13758

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01094 UPF0076

Important sites: ACT_SITE 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTVITPPGTQTPIAPFSPGTLADGIVYVSGTLAFDKDNNVAFPGDAEAQTRQVLETIK
CCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEECCCCCCHHHHHHHHHHH
SVIETAGGTMEDVTMNHIFLTDWVHYAPMNKVYAEYFPGDKPARYCIQCGLVKPGFVVEI
HHHHHCCCCCCCEEECEEEEEHHHHHCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHEEH
ASVAHIGKT
HHHHHCCCC
>Mature Secondary Structure 
PKTVITPPGTQTPIAPFSPGTLADGIVYVSGTLAFDKDNNVAFPGDAEAQTRQVLETIK
CCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEECCCCCCHHHHHHHHHHH
SVIETAGGTMEDVTMNHIFLTDWVHYAPMNKVYAEYFPGDKPARYCIQCGLVKPGFVVEI
HHHHHCCCCCCCEEECEEEEEHHHHHCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHEEH
ASVAHIGKT
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA